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Original Research Papers Anderson JA, Gilliland WD, Langley CH. Molecular population genetics and evolution of Drosophila meiosis genes. Genetics. 2009;181:177-185. Abstract Asai-Coakwell M, French CR, Ye M, Garcha K, Bigot K, Perera AG, Staehling-Hampton K, Mema SC, Chanda B, Mushegian A, Bamforth S, Doschak MR, Li G, Dobbs MB, Giampietro PF, Brooks BP, Vijayalakshmi P, Sauve Y, Abitbol M, Sundaresan P, van Heyningen V, Pourquie O, Underhill TM, Waskiewicz AJ, Lehmann OJ. Incomplete penetrance and phenotypic variability characterize Gdf6-attributable oculo-skeletal phenotypes. Hum Mol Genet. 2009;18:1110-1121. Abstract Aygun O, Xu X, Liu Y, Takahashi H, Kong SE, Conaway RC, Conaway JW, Svejstrup JQ. Direct inhibition of RNA polymerase II transcription by RECQL5. J Biol Chem. 2009;284:23197-23203. Abstract Blanchette M, Green RE, Macarthur S, Brooks AN, Brenner SE, Blumenstiel JP, Noll AC, Griffiths JA, Perera AG, Walton KN, Gilliland WD, Hawley RS, Staehling-Hampton K. Identification of EMS-induced mutations in Drosophila melanogaster by whole-genome sequencing. Genetics. 2009;182:25-32. Abstract Butcher RA, Ragains JR, Li W, Ruvkun G, Clardy J, Mak HY. Biosynthesis of the Caenorhabditis elegans dauer pheromone. Proc Natl Acad Sci U S A. 2009;106:1875-1879. Abstract Camahort R, Shivaraju M, Mattingly M, Li B, Nakanishi S, Zhu D, Shilatifard A, Workman JL, Gerton JL. Cse4 is Part of an Octameric Nucleosome in Budding Yeast. Mol Cell. 2009;35:794-805. Abstract Chen AE, Egli D, Niakan K, Deng J, Akutsu H, Yamaki M, Cowan C, Fitz-Gerald C, Zhang K, Melton DA, Eggan K. Optimal timing of inner cell mass isolation increases the efficiency of human embryonic stem cell derivation and allows generation of sibling cell lines. Cell Stem Cell 2009;4:103-106. Abstract Cochran JC, Sindelar CV, Mulko NK, Collins KA, Kong SE, Hawley RS, Kull FJ. ATPase cycle of the nonmotile kinesin NOD allows microtubule end tracking and drives chromosome movement. Cell. 2009;136:110-122. Abstract Dang W, Steffen KK, Perry R, Dorsey JA, Johnson FB, Shilatifard A, Kaeberlein M, Kennedy BK, Berger SL. Histone H4 lysine 16 acetylation regulates cellular lifespan. Nature. 2009;459:802-807. Abstract Deng M, Gao J, Suraneni P, Li R. Kinetochore-Independence Chromosome Poleward Movement during Anaphase of Meiosis II in Mouse Eggs. PLoS ONE. 2009;4:e5249. Abstract Deng M, Li R. Sperm chromatin-induced ectopic polar body extrusion in mouse eggs after ICSI and delayed egg activation. PLoS One. 2009;4:e7171. Abstract Ding N, Tomomori-Sato C, Sato S, Conaway RC, Conaway JW, Boyer TG. MED19 and MED26 are synergistic functional targets of the RE1 silencing transcription factor in epigenetic silencing of neuronal gene expression. J Biol Chem. 2009;284:2648-2656. Abstract Dinglasan RR, Devenport M, Florens L, Johnson JR, McHugh CA, Donnelly-Doman M, Carucci DJ, Yates JR, 3rd, Jacobs-Lorena M. The Anopheles gambiae adult midgut peritrophic matrix proteome. Insect Biochem Mol Biol. 2009;39:125-134. Abstract Egli D, Sandler VM, Shinohara ML, Cantor H, Eggan K. Reprogramming after chromosome transfer into mouse blastomeres. Curr Biol. 2009;19:1403-1409. Abstract Ferreira ME, Prochasson P, Berndt KD, Workman JL, Wright AP. Activator-binding domains of the SWI/SNF chromatin remodeling complex characterized in vitro are required for its recruitment to promoters in vivo. FEBS J. 2009;276:2557-2565. Abstract Gard S, Light W, Xiong B, Bose T, McNairn AJ, Harris B, Fleharty B, Seidel C, Brickner J, Gerton JL. Cohesinopathy mutations disrupt the subnuclear organization of chromatin. J Cell Biol. 2009;187:455-462. Abstract Gibb S, Zagorska A, Melton K, Tenin G, Vacca I, Trainor P, Maroto M, Dale JK. Interfering with Wnt signalling alters the periodicity of the segmentation clock. Dev Biol. 2009;330:21-31. Abstract Gilliland WD, Hughes SF, Gilliland WD, Vietti DL, Schweppe NM, Guo F, Johnson TJ, Hawley RS. Hypoxia transiently sequesters mps1 and polo to collagenase-sensitive filaments in Drosophila prometaphase oocytes. PLoS One. 2009;4:e7544. Abstract Gottschalk AJ, Timinszky G, Kong SE, Jin J, Cai Y, Swanson SK, Washburn MP, Florens L, Ladurner AG, Conaway JW, Conaway RC. Poly(ADP-ribosyl)ation directs recruitment and activation of an ATP-dependent chromatin remodeler. Proc Natl Acad Sci U S A. 2009;106:13770-13774. Abstract Harreman M, Taschner M, Sigurdsson S, Anindya R, Reid J, Somesh B, Kong SE, Banks CA, Conaway RC, Conaway JW, Svejstrup JQ. Distinct ubiquitin ligases act sequentially for RNA polymerase II polyubiquitylation. Proc Natl Acad Sci U S A. 2009;106:20705-20710. Abstract Hartmann B, Castelo R, Blanchette M, Boue S, Hughes SE, Gilliland WD, Cotitta JL, Takeo S, Collins KA, Hawley RS. Heterochromatic threads connect oscillating chromosomes during prometaphase I in Drosophila oocytes. PLoS Genet. 2009;5:e1000348. Abstract Ichida JK, Blanchard J, Lam K, Son EY, Chung JE, Egli D, Loh KM, Carter AC, Di Giorgio FP, Koszka K, Huangfu D, Akutsu H, Liu DR, Rubin LL, Eggan K. A small-molecule inhibitor of tgf-Beta signaling replaces sox2 in reprogramming by inducing nanog. Cell Stem Cell. 2009;5:491-503. Abstract Iulianella A, Sharma M, Vanden Heuvel GB, Trainor PA. Cux2 functions downstream of Notch signaling to regulate dorsal interneuron formation in the spinal cord. Development. 2009;136:2329-2334. Abstract Kim J, Guermah M, McGinty RK, Lee JS, Tang Z, Milne TA, Shilatifard A, Muir TW, Roeder RG. RAD6-Mediated transcription-coupled H2B ubiquitylation directly stimulates H3K4 methylation in human cells. Cell. 2009;137:459-471. Abstract Kulesa PM, Stark DA, Steen J, Lansford R, Kasemeier-Kulesa JC. Watching the assembly of an organ a single cell at a time using confocal multi-position photoactivation and multi-time acquisition. Organogenesis. 2009;5:238-247. Lee KK, Swanson SK, Florens L, Washburn MP, Workman JL. Yeast Sgf73/Ataxin-7 serves to anchor the deubiquitination module into both SAGA and Slik(SALSA) HAT complexes. Epigenetics & chromatin. 2009;2:2. Abstract Li B, Jackson J, Simon MD, Fleharty B, Gogol M, Seidel C, Workman JL, Shilatifard A. Histone H3 Lysine 36 Dimethylation (H3K36me2) Is Sufficient to Recruit the Rpd3s Histone Deacetylase Complex and to Repress Spurious Transcription. J Biol Chem. 2009;284:7970-7976. Abstract Li H, Kristensen DM, Coleman MK, Mushegian A. Detection of biochemical pathways by probabilistic matching of phyletic vectors. PLoS ONE. 2009;4:e5326. Abstract McNairn AJ, Gerton JL. Intersection of ChIP and FLIP, genomic methods to study the dynamics of the cohesin proteins. Chromosome Res. 2009;17:155-163. Abstract Magill G, Gallagher VF, Neaves WB. Ontological and Ethical Implication of Direct Nuclear Reprogramming. Kennedy Institute of Ethics Journal. 2009;19:23-32. Mosley Mosley AL, Pattenden SG, Carey M, Venkatesh S, Gilmore JM, Florens L, Workman JL, Washburn MP. Rtr1 is a CTD phosphatase that regulates RNA polymerase II during the transition from serine 5 to serine 2 phosphorylation. Mol Cell. 2009;34:168-178. Abstract Nakanishi S, Lee JS, Gardner KE, Gardner JM, Takahashi YH, Oza P, Jaspersen SL, Miele A, Dekker J, Peterson CL. Mechanisms that regulate localization of a DNA double-strand break to the nuclear periphery. Genes Dev. 2009;23:912-927. Abstract Resnick TD, Dej KJ, Xiang Y, Hawley RS, Ahn C, Orr-Weaver TL. Mutations in the chromosomal passenger complex and the condensin complex differentially affect synaptonemal complex disassembly and metaphase I configuration in Drosophila female meiosis. Genetics. 2009;181:875-887. Abstract Rubinstein B, Fournier MF, Jacobson K, Rubinstein B, Larripa K, Sommi P, Mogilner A. The elasticity of motor-microtubule bundles and shape of the mitotic spindle. Phys Biol. 2009;6:16005. Abstract Sardiu ME, Gilmore JM, Carrozza MJ, Li B, Workman JL, Florens L, Washburn MP. Determining protein complex connectivity using a probabilistic deletion network derived from quantitative proteomics. PLoS One. 2009;4:e7310. Abstract Sardiu ME, Florens L, Washburn MP. Evaluation of clustering algorithms for protein complex and protein interaction network assembly. J Proteome Res. 2009;8:2944-2952. Abstract Sarthy J, Schulze JM, Jackson J, Nakanishi S, Gardner JM, Hentrich T, Haug J, Johnston M, Jaspersen SL, Kobor MS, Shilatifard A. Linking cell cycle to histone modifications: SBF and H2B monoubiquitination machinery and cell-cycle regulation of H3K79 dimethylation. Mol Cell. 2009;35:626-641. Abstract Shen R, Weng C, Yu J, Xie T. eIF4A controls germline stem cell self-renewal by directly inhibiting BAM function in the Drosophila ovary. Proc Natl Acad Sci U S A. 2009;106:11623-11628. Abstract Shi M, Vivian CJ, Lee KJ, Ge C, Morotomi-Yano K, Manzl C, Bock F, Sato S, Tomomori-Sato C, Zhu R, Haug JS, Skaar JR, Richard DJ, Saraf A, Toschi A, Bolderson E, Florens L, Washburn MP, Khanna KK, Pagano M. INTS3 controls the hSSB1-mediated DNA damage response. J Cell Biol. 2009;187:25-32. Abstract Slaughter BD, Das A, Schwartz JW, Rubinstein B, Li R. Dual modes of cdc42 recycling fine-tune polarized morphogenesis. Dev Cell. 2009;17:823-835. Abstract Takahashi H, Martin-Brown S, Washburn MP, Florens L, Conaway JW, Conaway RC. Proteomics reveals a physical and functional link between hepatocyte nuclear factor 4 Takahashi YH, Lee JS, Swanson SK, Saraf A, Florens L, Washburn MP, Trievel RC, Shilatifard A. Regulation of H3K4 Trimethylation via Cps40 (Spp1) of COMPASS is monoubiquitination independent: implication for a Phe/Tyr switch by the catalytic domain of Set1. Mol Cell Biol. 2009;29:3478-3486. Abstract Trainor PA, Tsoy O, Ravcheev D, Mushegian A. Comparative genomics of ethanolamine utilization. J Bacteriol. 2009;191:7157-7164. Abstract Wai SC, Gerber SA, Li R. Multisite phosphorylation of the guanine nucleotide exchange factor Cdc24 during yeast cell polarization. PLoS One. 2009;4:e6563. Abstract Wang P, Lin C, Smith ER, Guo H, Sanderson BW, Wu M, Gogol M, Alexander T, Seidel C, Wiedemann LM, Ge K, Krumlauf R, Shilatifard A. Global analysis of H3K4 methylation defines MLL family member targets and points to a role for MLL1-mediated H3K4 methylation in the regulation of transcriptional initiation by RNA polymerase II. Mol Cell Biol. 2009;29:6074-6085. Abstract Weake VM, Wiegraebe W, Xie Y, Yin T, Stark D, Perko K, Alexander R, Schwartz J, He XC, Li L. Two-Photon Microscopy and Spectral Detection for Ex Vivo Imaging of Individual Stem Cells. Nature Protocols in Protocols Network. 2009. Available at: http://www.natureprotocols.com/2009/02/19/twophoton_microscopy_and_spect.php. Accessed September 28, 2009. 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Nature. 2009;462:547. Abstract Berger SL, Kouzarides T, Shiekhattar R, Shilatifard A. An operational definition of epigenetics. Genes Dev. 2009;23:781-783. Abstract Conaway RC, Conaway JW. Mediator comes out from the shadows. Structure. 2009;17:485-486. Abstract Conaway RC, Conaway JW. The INO80 chromatin remodeling complex in transcription, replication and repair. Trends Biochem Sci. 2009;34:71-77. Abstract Gibson WT, Gibson MC. Cell topology, geometry, and morphogenesis in proliferating epithelia. Curr Top Dev Biol. 2009;89:87-114. Abstract Hall HE, Hawley RS. The hows and Ys of genome integrity. Cell. 2009;138:830-832. Abstract Hawley RS. A direct measurement of crossingover in human orophase oocytes. F1000 Biol Rpts [serial online]. 2009;1:86. Available at: http://F1000.com/Reports/Biology/content/1/86., Accessed November 16, 2009. Hawley RS, Gilliland WD. Homologue pairing: getting it right. Nat Cell Biol. 2009;11:917-918. Abstract Hawley RS. 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Abstract Lawrence C, Sanders GE, Varga ZM, Baumann DP, Freeman A, Baur B, Francis M. Regulatory compliance and the zebrafish. Zebrafish. 2009;6:453-456. Abstract Li R, Wedlich-Soldner R. Bem1 complexes and the complexity of yeast cell polarization. Curr Biol. 2009;19:R195-R195. Liu Y, Conaway JW. When transcription meets recombination: a lesson from the human RECQ protein complexes. F1000 Biol Rpts [serial online]. 2009;1.76. Available at: http://f1000biology.com/reports/10.3410/b1-76/, Accessed October 14, 2009. Parrish M, Nolte C, Krumlauf R. Hox genes expression. In: L Squire, ed. New Encyclopedia of Neuroscience. 4th ed: Academic Press; 2009:1221-1231. Ross J, Li L. HSC mobilization: new incites and insights. Blood. 2009;114:1283-1284. Abstract Smith E, Shilatifard A. Developmental biology. Histone cross-talk in stem cells. Science. 2009;323:221-222. Abstract Smith KT, Workman JL. Histone deacetylase inhibitors: Anticancer compounds. Int J Biochem Cell Biol. 2009;41:21-25. 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