Publications
Publications
Supporting the scientific spirit of transparency, the Stowers Institute for Medical Research makes the data underlying its scientific publications freely accessible to the scientific community. Access to original, unprocessed data allows other scientists to validate and extend findings made by Stowers researchers.
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Pluripotency retention and exogenous mRNA introduction in planarian stem cells in culture
Lei K, Zhang W, Chen J, McKinney SA, Ross EJ, Lee HC, Sánchez Alvarado A. iScience. 2023;26:106001.
A molecular cell biology toolkit for the study of meiosis in the silkworm Bombyx mori.
Xiang Y, Tsuchiya D, Guo F, Gardner J, McCroskey S, Price A, Tromer EC, Walters JR, Lake CM, Hawley RS. G3 (Bethesda). 2023:jkad058. doi: 010.1093/g1093journal/jkad1058. doi: 10.1093/g3journal/jkad058.
S. pombe wtf use dual transcriptional regulation and selective protein exclusion from spores to cause meiotic drive
Nuckolls NL, Nidamangala Srinivasa A, Mok AC, Helston RM, Bravo Nunez MA, Lange JJ, Gallagher TJ, Seidel CW, Zanders SE. PLos Genet. 2022:e1009847 doi: 10.1371/journal.pgen.1009847.
Genome-wide quantification of contributions to sexual fitness identifies genes required for spore viability and health in fission yeast
Billmyre RB, Eickbush MT, Craig CJ, Lange JJ, Wood C, Helston RM, Zanders SE. PLoS Genet. 2022;18:e1010462 doi: 10.1371/journal.pgen.1010462.
The wtf meiotic driver gene family has unexpectedly persisted for over 100 million year
De Carvalho M, Jia GS, Nidamangala Srinivasa A, Billmyre RB, Xu YH, Lange JJ, Sabbarini IM, Du LL, Zanders SE. eLife. 2022;11. doi: 10.7554/eLife.81149.
A freeze-substitution approach with solvent-based glyoxal fixative to prevent distortion of ocular structures
Pang J, Zhao X, Deng F, Tsuchiya D, Malloy S, Parmely T, Xie T, Wang Y. [published ahead of print September 16 2022]. J Histotechnol. 2022:1-10.
Dual control of formin-nucleated actin assembly bythe chromatin and ER in mouse oocytes
Wang H, Hu J, Yi K, Ma Z, Song X, Lee Y, Kalab P, Bershadsky AD, Miao Y, Li R. [published ahead of print August 19 2022]. Curr Biol. 2022.
A nucleation barrier spring-loads the CBM signalosome for binary activation
Rodriguez Gama A, Miller T, Lange JJ, Unruh JR, Halfmann R. eLife. 2022;11:e79826. doi: 10.7554/eLife.79826.
The architecture and operating mechanism of a cnidarian stinging organelle
Karabulut A, McClain M, Rubinstein B, Sabin KZ, McKinney SA, Gibson MC. Nat Commun. 2022;13:3494. doi: 10.1038/s41467-41022-31090.
Molecular characterization of a flatworm Girardia isolate from Guanajuato, Mexico
Duncan EM, Nowotarski SH, Guerrero-Hernandez C, Ross EJ, D'Orazio JA, Clubes de Ciencia Mexico Workshop for Developmental B. [published ahead of print June 17 2022]. Dev Biol 2022.
Robust and sensitive in situ RNA detection method using Yn-situ
Wu Y, Xu W, Yu Z, Wang Y, Yu CR. Cell Rep Methods. 2022;2:100201. doi: 100210.101016/j.crmeth.102022.100201.
Enhanced lipogenesis through Ppary helps cavefish adapt to food scarcity
Xiong S, Wang W, Kenzior A, Olsen L, Krishnan J, Persons J, Medley K, Peuss R, Wang Y, Chen S, Zhang N, Thomas N, Miles JM, Sánchez Alvarado A, Rohner N. [published ahead of print April 8 2022].Curr Biol. 2022.
Impact of cilia-related genes on mitochondrial dynamics during Drosophila spermatogenesis
Bauerly E, Akiyama T, Staber C, Yi K, Gibson MC. Dev Biol. 2022;482:17-27.
Comprehensive Structure and Functional Adaptations of the Yeast Nuclear Pore Complex
Akey CW, Singh D, Ouch C, Echeverria I, Nudelman I, Varberg JM, Yu Z, Fang F, Shi Y, Wang J, Salzberg D, Song K, Xu C, Gumbart JC, Suslov S, Unruh J, Jaspersen SL, Chait BT, Sali A, Fernandez-Martinez J, Ludtke SJ, Villa E, Rout MP. Cell. 2022;185:361-378 e325.
Diverse mating phenotypes impact the spread of wtf meiotic drivers in Schizosaccharomyces pombe
Lopez Hernandez JF, Helston RM, Lange JJ, Billmyre RB, Schaffner SH, Eickbush MT, McCroskey S, Zanders SE. eLife. 2021;10.
A distinct inner nuclear membrane proteome in Saccharomyces cerevisiae gametes
Shelton SN, Smith SE, Unruh JR, Jaspersen SL. G3 (Bethesda). 2021:jkab345. doi: 310.1093/g1093journal/jkab1345.
Hox genes regulate asexual reproductive behavior and tissue segmentation in adult animals
Arnold CP, Lozano AM, Mann FG, Jr., Nowotarski SH, Haug JO, Lange JJ, Seidel CW, Sánchez Alvarado A. Nat Commun. 2021;12:6706. doi: 6710.1038/s41467-41021-26986-41462.
Planarian Ovary Dissection for Ultrastructural Analysis and Antibody Staining
Guo F, McClain M, Zhao X, Yi K, Parmely T, Unruh J, Slaughter B, Kruglyak L, Guo L, Sánchez Alvarado A. J Vis Exp. 2021:e62713. doi:62710.63791/62713.
Tumor-initiating stem cell shapes its microenvironment into an immunosuppressive barrier and pro-tumorigenic niche
He X, Smith SE, Chen S, Li H, Wu D, Meneses-Giles PI, Wang Y, Hembree M, Yi K, Zhao X, Guo F, Unruh JR, Maddera LE, Yu Z, Scott A, Perera A, Wang Y, Zhao C, Bae K, Box A, Haug JS, Tao F, Hu D, Hansen DM, Qian P, Saha S, Dixon D, Anant S, Zhang D, Lin EH, Sun W, Wiedemann LM, Li L. Cell Rep. 2021;36:109674.doi: 10.1016/j.celrep.2021.109674.
The disordered regions of the methyltransferase SETD2 govern its function by regulating its proteolysis and phase separation
Bhattacharya S, Lange JJ, Levy M, Florens L, Washburn MP, Workman JL. J Biol Chem. 2021:101075.
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The Stacking Cell Puzzle
Mir M, Nowotarski S. Patterns. 2024;5:101040.
Identification and Localization of Cell Types in the Mouse Olfactory Bulb Using Slide-SeqV2
Fang A, Petentler K, Price A, Malloy S, Maddera C, Russell J, Treese M, Li H, Wang Y, McKinney S, Perera A, Yu CR. Methods Mol Biol. 2023;2710:171-183. Published Erratum Methods Mol Biol. 2023;2710:C1. doi: 10.1007/978-1-0716-3425-7_17.
Serial block-face scanning electron microscopy of Schmidtea mediterranea.
McClain ML, Nowotarski SH. Methods Cell Biol. 2023;177:213-240.
Split-GFP Complementation to Study the Nuclear Membrane Proteome Using Microscopy
Shelton SN, Smith SE, Jaspersen SL. In: MW Goldberg, ed. Methods Mol Biol 2022/04/13 ed. New York, NY: Humana; 2022;2502 205-213.
Superresolution Microscopy for Visualization of Physical Contacts Between Chromosomes at Nanoscale Resolution
Yu Z, Potapova TA. Methods Mol Biol. 2022;2458:359-375.
In Situ Hematopoietic Stem Cell Imaging
Venkatraman A, Smith SE, Pinho S, Zhao M, Li L, Frenette P. Methods Mol Biol. 2021;2185:373-382.
Functional Analysis of the Yeast LINC Complex Using Fluctuation Spectroscopy and Super-Resolution Imaging
Unruh JR, Slaughter BD, Jaspersen SL. Methods Mol Biol: Meiosis.2018;1840:137-161.
The anatomy of a nucleus: As revealed by chromosome painting
Slaughter BD, Hawley RS. PLoS Genet.2018;14:e1007445. doi: 10.1371/journal.pgen.1007445.
Sec66-Dependent Regulation of Yeast Spindle-Pole Body Duplication Through Pom152.
Katta SS, Chen J, Gardner JM, Friederichs JM, Smith SE, Gogol M, Unruh JR, Slaughter BD, Jaspersen SL. Genetics. 2015;201:1479-1495
Immunogold Labeling for Electron Microscopy: Strategy and Problem Solving.
Guo F, Huang BQ. In: ECT Yeung, C Stasolla, MJ Sumner, and BQ Huang, eds. Plant Microtechniques and Protocols: Springer International Publishing; 2015:225-249.
Imaging methodologies for systems biology.
Smith SE, Slaughter BD, Unruh JR. Cell Adh & Migr. 2014;8:468-477.
Visualization of Lipid Droplets in C. elegans by Light and Electron Microscopy.
Mak HY. Methods Cell Biol. 2013;116C:39-51.
Symmetry breaking and polarity establishment during mouse oocyte maturation.
Yi K, Rubinstein B, Li R. Philos Trans R Soc Lond B Biol Sci. 2013;368:20130002.
Quality Control: Putting Protein Aggregates in a Bind.
Unruh JR, Slaughter BD, Li R. Curr Biol. 2013;23:R74-R76.
Reply to Yablonka et al.: Parity in Data Processing is Essential in Correlation Analyses.
Ma L, Qiu Q, Gradwohl S, Scott A, Yu EQ, Alexander R, Wiegraebe W, Yu CR. PNAS. 2012;109:E2918-E2910.
Actin cytoskeleton in cell polarity and asymmetric division during mouse oocyte maturation.
Yi K, Li R. Cytoskeleton (Hoboken). 2012;69:727-737.
Fluorescence fluctuation spectroscopy and imaging methods for examination of dynamic protein interactions in yeast.
Slaughter BD, Unruh JR, Li R. Methods Mol Biol. 2011;759:283-306.
Toward Quantitative "In Vivo Biochemistry" with Fluorescence Fluctuation Spectroscopy.
Slaughter BD, Li R. Mol Biol Cell. 2010;21:4306-4311.
Symmetry breaking in the life cycle of the budding yeast.
Slaughter BD, Smith SE, Li R. Cold Spring Harbor Perspect Biol. 2010;1:a003384.
