Publications
Publications
Supporting the scientific spirit of transparency, the Stowers Institute for Medical Research makes the data underlying its scientific publications freely accessible to the scientific community. Access to original, unprocessed data allows other scientists to validate and extend findings made by Stowers researchers.
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PCR amplicons to determine human centromeric array copy number reveal wide-spread size variation and instability in cancer
de Lima LG, Howe E, Singh VP, Potapova T, Li H, Xu B, Castle J, Crozier S, Harrison CJ, Clifford SC, Miga KH, Ryan SL, Gerton JL. Cell Genom. 2021;1:
100064.
doi: 10.1016/j.xgen.2021.100064.Immature Follicular Origins and Disrupted Oocyte Growth Pathways Contribute to Decreased Gamete Quality During Reproductive Juvenescence in Mice
Kusuhara A, Babayev E, Zhou LT, Singh VP, Gerton JL, Duncan FE. Frontiers. 2021;9:Article 693742. doi: 693710.693389/fcell.692021.693742.
The structure, function and evolution of a complete human chromosome 8
Logsdon GA, Vollger MR, Hsieh P, Mao Y, Liskovykh MA, Koren S, Nurk S, Mercuri L, Dishuck PC, Rhie A, de Lima LG, Dvorkina T, Porubsky D, Harvey WT, Mikheenko A, Bzikadze AV, Kremitzki M, Graves-Lindsay TA, Jain C, Hoekzema K, Murali SC, Munson KM, Baker C, Sorensen M, Lewis AM, Surti U, Gerton JL, Larionov V, Ventura M, Miga KH, Phillippy AM, Eichler EE. T [published ahead of print April 9 2021]. Nature. 2021.
DNA replication, transcription, and H3K56 acetylation regulate copy number and stability at tandem repeats
Salim D, Bradford WD, Rubinstein B, Gerton JL. G3 (Bethesda). 2021:jkab082. doi:010.1093/g1093journal/jkab1082.
Protocol for mouse trophoblast stem cell isolation, differentiation and cytokine detection
Singh VP, Gerton JL. STAR Protoc. 2021;2:100242. doi: 10.1016/ j.xpro.2020.100242.
Origins and evolutionary patterns of the 1.688 satellite DNA family in Drosophila phylogeny
de Lima LG, Hanlon SL, Gerton JL. G3 (Bethesda). 2020;10:4129-4146.
Telomere-to-telomere assembly of a complete human X chromosome
Miga KH, Koren S, Rhie A, Vollger MR, Gershman A, Bzikadze A, Brooks S, Howe E, Porubsky D, Logsdon GA, Schneider VA, Potapova T, Wood J, Chow W, Armstrong J, Fredrickson J, Pak E, Tigyi K, Kremitzki M, Markovic C, Maduro V, Dutra A, Bouffard GG, Chang AM, Hansen NF, Wilfert AB, Thibaud-Nissen F, Schmitt AD, Belton JM, Selvaraj S, Dennis MY, Soto DC, Sahasrabudhe R, Kaya G, Quick J, Loman NJ, Holmes N, Loose M, Surti U, Risques RA, Graves Lindsay TA, Fulton R, Hall I, Paten B, Howe K, Timp W, Young A, Mullikin JC, Pevzner PA, Gerton JL, Sullivan BA, Eichler EE, Phillippy AM. Nature. 2020;585:79-84.
Persistent DNA damage and senescense in the placenta impacts developmental outcomes of embryos
Singh VP, McKinney S, Gerton JL. Dev Cell. 2020;54:333-347 e337.
Super-resolution microscopy reveals linkages between ribosomal DNA on heterologous chromosomes
Potapova TA, Unruh JR, Yu Z, Rancati G, Li H, Stampfer MR, Gerton JL. J Cell Biol. 2019;218:2492-2513.
The stoichiometry of the outer kinetochore is modulated by microtubule-proximal regulatory factors
Dhatchinamoorthy K, Unruh JR, Lange JJ, Levy M, Slaughter BD, Gerton JL. J Cell Biol. 2019;218:2124-2135.
Oocyte-specific deletion of Hdac8 in mice reveals stage-specific effects on fertility
Singh VP, Yueh WT, Gerton JL, Duncan FE. Reproduction. 2019;157:305-316.
Chromatin assembly factor-1 (CAF-1) chaperone regulates Cse4 deposition into chromatin in budding yeast
Hewawasam GS, Dhatchinamoorthy K, Mattingly M, Seidel C, Gerton JL. Chromatin assembly factor-1 (CAF-1) chaperone regulates Cse4 deposition into chromatin in budding yeast. [published ahead of print May 8 2018]. Nucleic Acids Res.2018.
Integrative structure and functional anatomy of a nuclear pore complex
Kim SJ, Fernandez-Martinez J, Nudelman I, Shi Y, Zhang W, Raveh B, Herricks T, Slaughter BD, Hogan JA, Upla P, Chemmama IE, Pellarin R, Echeverria I, Shivaraju M, Chaudhury AS, Wang J, Williams R, Unruh JR, Greenberg CH, Jacobs EY, Yu Z, de la Cruz MJ, Mironska R, Stokes DL, Aitchison JD, Jarrold MF, Gerton JL, Ludtke SJ, Akey CW, Chait BT, Sali A, Rout MP. Nature.2018;555:475-482.
Cohesin facilitates zygotic genome activation in zebrafish
Meier M, Grant J, Dowdle A, Thomas A, Gerton J, Collas P, O'Sullivan JM, Horsfield JA. Development.2018;145:dev156521. 156510.151242/dev.156521.
Structural plasticity of the living kinetochore
Dhatchinamoorthy K, Shivaraju M, Lange JJ, Rubinstein B, Unruh JR, Slaughter BD, Gerton JL. J Cell Biol.2017;216:3551-3570.
Age-associated dysregulation of protein metabolism in the mammalian oocyte
Duncan FE, Jasti S, Paulson A, Kelsh JM, Fegley B, Gerton JL. Aging Cell.2017;16:1381-1393.
DNA replication stress restricts ribosomal DNA copy number
Salim D, Bradford WD, Freeland A, Cady G, Wang J, Pruitt SC, Gerton JL. PLoS Genet. 2017;13:e1007006.doi: 10.1371/journal.pgen.1007006.
Ribosomal DNA copy number loss and sequence variation in cancer
Xu B, Li H, Perry JM, Singh VP, Unruh J, Yu Z, Zakari M, McDowell W, Li L, Gerton JL. PLoS Genet.2017;13:e1006771. doi: 10.1371/journal.pgen.1006771
Condensin II is anchored by TFIIIC and H3K4me3 in the mammalian genome and supports expression of active dense gene clusters
KC Y, BD S, Gerton JL. Sci Adv. 2017;3:e1700191. doi: 1700110.1701126/sciadv.1700191. .
Mms21 SUMO Ligase Activity Promotes Nucleolar Function in Saccharomyces cerevisiae
Kim DH, Harris B, Wang F, Seidel C, McCroskey S, Gerton JL. Genetics.2016;204:645-658.
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