Publications
Publications
Supporting the scientific spirit of transparency, the Stowers Institute for Medical Research makes the data underlying its scientific publications freely accessible to the scientific community. Access to original, unprocessed data allows other scientists to validate and extend findings made by Stowers researchers.
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IRF6 and SPRY4 Signaling Interact in Periderm Development
Kousa YA, Roushangar R, Patel N, Walter A, Marangoni P, Krumlauf R, Klein OD, Schutte BC. J Dent Res.2017;96:1306-1313.
HOXA1 and TALE proteins display cross-regulatory interactions and form a combinatorial binding code on HOXA1 targets
De Kumar B, Parker HJ, Paulson A, Parrish ME, Pushel I, Singh NP, Zhang Y, Slaughter BD, Unruh JR, Florens L, Zeitlinger J, Krumlauf R. Genome Res.2017;27:1501-1512.
Multiple modes of Lrp4 function in modulation of Wnt/beta-catenin signaling during tooth development
Ahn Y, Sims C, Murray MJ, Kuhlmann PK, Fuentes-Antras J, Weatherbee SD, Krumlauf R. Development.2017;144:2824-2836.
Dynamic regulation of Nanog and stem cell-signaling pathways by Hoxa1 during early neuro-ectodermal differentiation of ES cells
De Kumar B, Parker HJ, Parrish ME, Lange JJ, Slaughter BD, Unruh JR, Paulson A, Krumlauf R. Proc Natl Acad Sci U S A.2017;114:5838-5845.
FGF signaling refines Wnt gradients to regulate patterning of taste papillae
Prochazkova M, Hakkinen TJ, Prochazka J, Spoutil F, Jheon AH, Ahn Y, Krumlauf R, Jernvall J, Klein OD. Development.2017;144:2212-2221.
Analyses of fugu hoxa2 genes provide evidence for subfunctionalization of neural crest cell and rhombomere cis-regulatory modules during vertebrate evolution.
McEllin JA, Alexander TB, Tumpel S, Wiedemann LM, Krumlauf R. Dev Biol. 2016;409:530-542.
Analysis of dynamic changes in retinoid-induced transcription and epigenetic profiles of murine Hox clusters in ES cells.
De Kumar B, Parrish ME, Slaughter BD, Unruh JR, Gogol M, Seidel C, Paulson A, Li H, Gaudenz K, Peak A, McDowell W, Fleharty B, Ahn Y, Lin C, Smith E, Shilatifard A, Krumlauf R. Genome Res. 2015;25:1229-1243.
In vivo mechanical loading rapidly activates beta-catenin signaling in osteocytes through a prostaglandin mediated mechanism.
Lara-Castillo N, Kim-Weroha NA, Kamel MA, Javaheri B, Ellies DL, Krumlauf RE, Thiagarajan G, Johnson ML. Bone. 2015;76:58-66.
A Hox regulatory network of hindbrain segmentation is conserved to the base of vertebrates.
Parker HJ, Bronner ME, Krumlauf R. Nature. 2014;514:490-493.
Wise Regulates Bone Deposition through Genetic Interactions with Lrp5.
Ellies DL, Economou A, Viviano B, Rey JP, Paine-Saunders S, Krumlauf R, Saunders S. PLoS One. 2014;9:e96257.
Long-range regulation by shared retinoic acid response elements modulates dynamic expression of posterior Hoxb genes in CNS development.
Ahn Y, Mullan HE, Krumlauf R. Dev Biol. 2014;388:134-144.
Combined function of HoxA and HoxB clusters in neural crest cells
Vieux-Rochas M, Mascrez B, Krumlauf R, Duboule D. Dev Biol.2013;382:293-301.
Shadow enhancers flanking the HoxB cluster direct dynamic Hox expression in early heart and endoderm development.
Nolte C, Jinks T, Wang X, Martinez Pastor MT, Krumlauf R. Dev Biol. 2013;383:158-173.
Minimal genome encoding proteins with constrained amino acid repertoire.
Tsoy O, Yurieva M, Kucharavy A, O'Reilly M, Mushegian A. Nucleic Acids Res. 2013;41:8444-8451.
Duplications of hox gene clusters and the emergence of vertebrates
Soshnikova N, Dewaele R, Janvier P, Krumlauf R, Duboule D. Dev Biol.2013;378:194-199.
Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution.
Smith JJ, Kuraku S, Holt C, Sauka-Spengler T, Jiang N, Campbell MS, Yandell MD, Manousaki T, Meyer A, Bloom OE, Morgan JR, Buxbaum JD, Sachidanandam R, Sims C, Garruss AS, Cook M, Krumlauf R, Wiedemann LM, Sower SA, Decatur WA, Hall JA, Amemiya CT, Saha NR, Buckley KM, Rast JP, Das S, Hirano M, McCurley N, Guo P, Rohner N, Tabin CJ, Piccinelli P, Elgar G, Ruffier M, Aken BL, Searle SM, Muffato M, Pignatelli M, Herrero J, Jones M, Brown CT, Chung-Davidson YW, Nanlohy KG, Libants SV, Yeh CY, McCauley DW, Langeland JA, Pancer Z, Fritzsch B, de Jong PJ, Zhu B, Fulton LL, Theising B, Flicek P, Bronner ME, Warren WC, Clifton SW, Wilson RK, Li W. Nat Genet. 2013;45:415-421.
Lrp4 and Wise interplay controls the formation and patterning of mammary and other skin appendage placodes by modulating Wnt signaling.
Ahn Y, Sims C, Logue JM, Weatherbee SD, Krumlauf R. Development. 2013;140:583-593.
Poised RNA Polymerase II Changes over Developmental Time and Prepares Genes for Future Expression.
Gaertner B, Johnston J, Chen K, Wallaschek N, Paulson A, Garruss AS, Gaudenz K, De Kumar B, Krumlauf R, Zeitlinger J. Cell Rep. 2012;2:1670-1683.
Enhancer-associated H3K4 monomethylation by Trithorax-related, the Drosophila homolog of mammalian MLL3/MLL4.
Herz HM, Mohan M, Garruss AS, Liang K, Takahashi YH, Mickey K, Voets O, Verrijzer CP, Shilatifard A. Genes Dev. 2012;26:2604-2620.
Evolution of anterior Hox regulatory elements among chordates.
Natale A, Sims C, Chiusano ML, Amoroso A, D'Aniello E, Fucci L, Krumlauf R, Branno M, Locascio A. BMC Evol Biol.2011;11:330.
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Electroporation of living embryos
Jin Z, Xie T, Inoue T, Correia K, Krumlauf R. Book Chapter 6, In Cell Biology: A Laboratory Handbook. 3rd Ed. Amsterdam ; Boston: Elsevier Academic; 2006:35-41.
Expression of Hox Genes in the Nervous System of Vertebrates
Nolte C, Krumlauf R. In: S Papageorgiou, ed. Hox Gene Expression. Austin, TX: Landes Bioscience & Springer; 2006;Epub Open Access:14-41.
Hindbrain development and evolution: past, present, and future
Rosa-Molinar E, Krumlauf RK, Pritz MB. Brain Behav Evol.2005;66:219-221.
Neural Crest Cells
Trainor PA, Bronner-Fraser M, Krumlauf R. In: RP Lanza, ed. Book Chapter for 2 vol. work, The Handbook of Stem Cells. Boston, MA: Elsevier Academic; 2004;1:219-232.
Spring forward and fall back. Dynamics in formation of somite boundaries
Krumlauf R. Dev Cell. 2002;3:605-606.
Development. Riding the crest of the Wnt signaling wave
Trainor P, Krumlauf R. Development. Science. 2002;297:781-783.
Non-radioactive in situ hybridization: simplified procedures for use in whole-mounts of mouse and chick embryos
Ariza-McNaughton, L., & Krumlauf, R. In Int Rev Neurobiol.2002;47:239-250.
The Wnt/beta-catenin pathway posteriorizes neural tissue in Xenopus by an indirect mechanism requiring FGF signalling
Domingos PM, Itasaki N, Jones CM, Mercurio S, Sargent MG, Smith JC, Krumlauf R. Dev Biol. 2001;239:148-160.
The origin of the neural crest
Holland PW, Wada H, Manzanares M, Krumlauf R, Shimeld S. In: PE Ahlberg, and S Association, eds. Major Events in Early Vertebrate Evolution: Palaeontology, Phylogeny, Genetics, and Development. London; New York: Taylor & Francis. 2001;61:33-39 xiv, 418 p.
Dynamic expression patterns of the pudgy/spondylocostal dysostosis gene Dll3 in the developing nervous system
Kusumi K, Dunwoodie SL, Krumlauf R. Mech Dev. 2001;100:141-144.
Differences in Krox20-dependent regulation of Hoxa2 and Hoxb2 during hindbrain development
Maconochie MK, Nonchev S, Manzanares M, Marshall H, Krumlauf R. Dev Biol. 2001;233:468-481.
Hox Genes
Gavalas A, Krumlauf R. In: S Brenner, JH Miller, and W Broughton, eds. Encyclopedia of Genetics. San Diego: Academic Press; 2001:978-979 974 v. (lxx, 2257 p.).
An impulse to the brain--using in vivo electroporation
Inoue T, Krumlauf R. Nat Neurosci. 2001;4 Suppl:1156-1158.
Building from the bottom up
Krull CE, Krumlauf R. Nat Cell Biol. 2001;3:E138-139.
Novel roles for head mesoderm and somites in patterning the vertebrate neural tube
Trainor P, Bel-Vialar S, Itasaki N, Krumlauf R. In: EJ Sanders, JW Lash, and CP Ordahl, eds. The Origin and Fate of Somites. Amsterdam ; Washington, DC: IOS Press; 2001:30-47 xxi, 245 p.
Hox genes, neural crest cells and branchial arch patterning
Trainor PA, Krumlauf R. Curr Opin Cell Biol. 2001;13:698-705.
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