Publications
Publications
Supporting the scientific spirit of transparency, the Stowers Institute for Medical Research makes the data underlying its scientific publications freely accessible to the scientific community. Access to original, unprocessed data allows other scientists to validate and extend findings made by Stowers researchers.
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Dynamic RNA acetylation revealed by quantitative cross-evolutionary mapping
Sas-Chen A, Thomas JM, Matzov D, Taoka M, Nance KD, Nir R, Bryson KM, Shachar R, Liman GLS, Burkhart BW, Gamage ST, Nobe Y, Briney CA, Levy MJ, Fuchs RT, Robb GB, Hartmann J, Sharma S, Lin Q, Florens L, Washburn MP, Isobe T, Santangelo TJ, Shalev-Benami M, Meier JL, Schwartz S. Nature. 2020;583:638-643.
Merkel cell polyomavirus activates LSD1-mediated blockade of non-canonical BAF to regulate transformation and tumorigenesis
Park DE, Cheng J, McGrath JP, Lim MY, Cushman C, Swanson SK, Tillgren ML, Paulo JA, Gokhale PC, Florens L, Washburn MP, Trojer P, DeCaprio JA. Nat Cell Biol. 2020;22:603-615. Author Correction: Nat Cell Biol. 2020;22:752.
Integrative Modeling of a Sin3/HDAC Complex Sub-structure
Banks, C.A.S., Zheng,Y., Miah, S., Hoa, Y., Adams, M. K., Wen, Z., Thornton, J. L., Florens, L., Washburn, M. P. Cell Rep. 2020:31;107516. doi: 10.1016/j.celrep.
A Systems Chemoproteomic Analysis of Acyl-CoA/Protein Interaction Networks
Levy MJ, Montgomery DC, Sardiu ME, Montano JL, Bergholtz SE, Nance KD, Thorpe AL, Fox SD, Lin Q, Andresson T, Florens L, Washburn MP, Meier JL. Cell Chem Biol. 2020;27:322-333.e5.
NRBP1-Containing Cul2/Cul4A regulates amyloid beta production by targeting BRI2 and BRI3 for degradation
Yasukawa T, Tsutsui A, Tomomori-Sato C, Soto S, Saraf A, Washburn MP, Florens L, Terada T, Shimizu K, Conaway RC, Conaway JW, Aso T. Cell Rep. 2020;30:3478-3491.e6. doi: 10.1016/j.celrep.2020.02.059.
The role of Mediator and Little Elongation Complex in transcription termination
Takahashi H, Ranjan A, Chen S, Suzuki H, Shibata M, Hirose T, Hirose H, Sasaki K, Abe R, Chen K, He Y, Zhang Y, Takigawa I, Tsukiyama T, Watanabe M, Fujii S, Iida M, Yamamoto J, Yamaguchi Y, Suzuki Y, Matsumoto M, Nakayama KI, Washburn MP, Saraf A, Florens L, Sato S, Tomomori-Sato C, Conaway RC, Conaway JW, Hatakeyama S. Nat Commun. 2020;11:1063. doi: 10.1038/s41467-020-14849-1.
The Chromatin Bound Proteome of the Human Malaria Parasite
Batugedara G, Lu XM, Saraf A, Sardiu ME, Cort A, Abel S, Prudhomme J, Washburn MP, Florens L, Bunnik EM, Le Roch KG. Microb Genom. 2020;6:e000327. doi: 000310.001099/mgen.000320.000327.
STRIPAK directs PP2A activity toward MAP4K4 to promote oncogenic transformation
Kim JW, Berrios C, Kim M, Schade AE, Adelmant G, Yeerna H, Damato E, Iniguez AB, Florens L, Washburn MP, Stegmaier K, Gray NS, Tamayo P, Gjoerup O, Marto JA, DeCaprio J, Hahn WC. eLife. 2020;9. doi: 10.7554/eLife.53003.
BRK Phosphorylates SMAD4 for proteasomal degradation and inhibits tumor suppressor FRK to control SNAIL, SLUG and metastatic potential
Miah S, Banks CAS, Ogunbolude Y, Bagu ET, Berg JM, Saraf A, Tettey TT, Hattem G, Dayebgadoh G, Kempf CG, Sardiu M, Napper S, Florens L, Lukong KE, Washburn MP. Sci Adv. 2019;5:eaaw3113. doi: 3110.1126/sciadv.aaw3113.
Biochemical Reduction of the Topology of the Diverse WDR76 Protein Interactome
Dayebgadoh G, Sardiu ME, Florens L, Washburn MP. J Proteome Res. 2019;18:3479-3491.
The E3 ubiquitin ligase SPOP controls resolution of systemic inflammation by triggering MyD88 degradation
Guillamot M, Ouazia D, Dolgalev I, Yeung ST, Kourtis N, Dai Y, Corrigan K, Zea-Redondo L, Saraf A, Florens L, Washburn MP, Tikhonova AN, Malumbres M, Gong Y, Tsirigos A, Park C, Barbieri C, Khanna KM, Busino L, Aifantis I. Nat Immunol. 2019;20:1196-1207.
RUNX proteins desensitize multiple myeloma to lenalidomide via protecting IKZFs from degradation
Zhou N, Gutierrez-Uzquiza A, Zheng XY, Chang R, Vogl DT, Garfall AL, Bernabei L, Saraf A, Florens L, Washburn MP, Illendula A, Bushweller JH, Busino L. Leukemia. 2019;33:2006-2021.
Ataxin-7 and Non-stop coordinate SCAR protein levels, subcellular localization, and actin cytoskeleton organization
Cloud V, Thapa A, Morales-Sosa P, Miller T, Miller SA, Holsapple D, Gerhart P, Momtahan E, Jack JL, Leiva E, Rapp SR, Shelton LG, Pierce RA, Martin-Brown S, Florens L, Washburn MP, Mohan RD. eLife. 2019;8. doi: 10.7554/eLife.49677.
Junctional tumor suppressors interact with 14-3-3 proteins to control planar spindle alignment
Nakajima YI, Lee ZT, McKinney SA, Swanson SK, Florens L, Gibson MC. J Cell Biol. 2019;218:1824-1838.
Evaluating Chromatographic Approaches for the Quantitative Analysis of a Human Proteome on Orbitrap-Based Mass Spectrometry Systems
Zhang Y, Wen Z, Washburn MP, Florens L. J Proteome Res. 2019;18:1857-1869.
DYRK1A regulates the recruitment of 53BP1 to the sites of DNA damage in part through interaction with RNF169
Menon VR, Ananthapadmanabhan V, Swanson S, Saini S, Sesay F, Yakovlev V, Florens L, DeCaprio JA, Washburn MP, Dozmorov M, Litovchick L. Cell Cycle. 2019;18:531-551.
Topological Scoring of Protein Interaction Networks
Sardiu ME, Gilmore JM, Groppe BD, Dutta A, Florens L, Washburn MP. Nat Commun. 2019;10:1118. doi: 1110.1038/s41467-41019-09123-y.
Characterization of a metazoan ADA acetyltransferase complex
Soffers JHM, Li X, Saraf A, Seidel CW, Florens L, Washburn MP, Abmayr SM, Workman JL. Nucleic Acids Res. 2019;47:3383-3394.
A chemoproteomic portrait of the oncometabolite fumarate
Kulkarni RA, Bak DW, Wei D, Bergholtz SE, Briney CA, Shrimp JH, Alpsoy A, Thorpe AL, Bavari AE, Crooks DR, Levy M, Florens L, Washburn MP, Frizzell N, Dykhuizen EC, Weerapana E, Linehan WM, Meier JL. Nat Chem Biol. 2019;15:391-400
Host Vesicle Fusion Protein VAPB Is Required for the Nuclear Egress Stage of Herpes Simplex Virus Type-1 (HSV-1) Replication
Saiz-Ros N, Czapiewski R, Epifano I, Stevenson A, Swanson SK, Dixon CR, Zamora DB, McElwee M, Vijayakrishnan S, Richardson CA, Dong L, Kelly DA, Pytowski L, Goldberg MW, Florens L, Graham SV, Schirmer EC. Cells. 2019;8 E120. doi: 110.3390/cells8020120.
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