Publications
Publications
Supporting the scientific spirit of transparency, the Stowers Institute for Medical Research makes the data underlying its scientific publications freely accessible to the scientific community. Access to original, unprocessed data allows other scientists to validate and extend findings made by Stowers researchers.
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The role of Mediator and Little Elongation Complex in transcription termination
Takahashi H, Ranjan A, Chen S, Suzuki H, Shibata M, Hirose T, Hirose H, Sasaki K, Abe R, Chen K, He Y, Zhang Y, Takigawa I, Tsukiyama T, Watanabe M, Fujii S, Iida M, Yamamoto J, Yamaguchi Y, Suzuki Y, Matsumoto M, Nakayama KI, Washburn MP, Saraf A, Florens L, Sato S, Tomomori-Sato C, Conaway RC, Conaway JW, Hatakeyama S. Nat Commun. 2020;11:1063. doi: 10.1038/s41467-020-14849-1.
The Chromatin Bound Proteome of the Human Malaria Parasite
Batugedara G, Lu XM, Saraf A, Sardiu ME, Cort A, Abel S, Prudhomme J, Washburn MP, Florens L, Bunnik EM, Le Roch KG. Microb Genom. 2020;6:e000327. doi: 000310.001099/mgen.000320.000327.
STRIPAK directs PP2A activity toward MAP4K4 to promote oncogenic transformation
Kim JW, Berrios C, Kim M, Schade AE, Adelmant G, Yeerna H, Damato E, Iniguez AB, Florens L, Washburn MP, Stegmaier K, Gray NS, Tamayo P, Gjoerup O, Marto JA, DeCaprio J, Hahn WC. eLife. 2020;9. doi: 10.7554/eLife.53003.
BRK Phosphorylates SMAD4 for proteasomal degradation and inhibits tumor suppressor FRK to control SNAIL, SLUG and metastatic potential
Miah S, Banks CAS, Ogunbolude Y, Bagu ET, Berg JM, Saraf A, Tettey TT, Hattem G, Dayebgadoh G, Kempf CG, Sardiu M, Napper S, Florens L, Lukong KE, Washburn MP. Sci Adv. 2019;5:eaaw3113. doi: 3110.1126/sciadv.aaw3113.
Biochemical Reduction of the Topology of the Diverse WDR76 Protein Interactome
Dayebgadoh G, Sardiu ME, Florens L, Washburn MP. J Proteome Res. 2019;18:3479-3491.
The E3 ubiquitin ligase SPOP controls resolution of systemic inflammation by triggering MyD88 degradation
Guillamot M, Ouazia D, Dolgalev I, Yeung ST, Kourtis N, Dai Y, Corrigan K, Zea-Redondo L, Saraf A, Florens L, Washburn MP, Tikhonova AN, Malumbres M, Gong Y, Tsirigos A, Park C, Barbieri C, Khanna KM, Busino L, Aifantis I. Nat Immunol. 2019;20:1196-1207.
RUNX proteins desensitize multiple myeloma to lenalidomide via protecting IKZFs from degradation
Zhou N, Gutierrez-Uzquiza A, Zheng XY, Chang R, Vogl DT, Garfall AL, Bernabei L, Saraf A, Florens L, Washburn MP, Illendula A, Bushweller JH, Busino L. Leukemia. 2019;33:2006-2021.
Ataxin-7 and Non-stop coordinate SCAR protein levels, subcellular localization, and actin cytoskeleton organization
Cloud V, Thapa A, Morales-Sosa P, Miller T, Miller SA, Holsapple D, Gerhart P, Momtahan E, Jack JL, Leiva E, Rapp SR, Shelton LG, Pierce RA, Martin-Brown S, Florens L, Washburn MP, Mohan RD. eLife. 2019;8. doi: 10.7554/eLife.49677.
Junctional tumor suppressors interact with 14-3-3 proteins to control planar spindle alignment
Nakajima YI, Lee ZT, McKinney SA, Swanson SK, Florens L, Gibson MC. J Cell Biol. 2019;218:1824-1838.
Evaluating Chromatographic Approaches for the Quantitative Analysis of a Human Proteome on Orbitrap-Based Mass Spectrometry Systems
Zhang Y, Wen Z, Washburn MP, Florens L. J Proteome Res. 2019;18:1857-1869.
DYRK1A regulates the recruitment of 53BP1 to the sites of DNA damage in part through interaction with RNF169
Menon VR, Ananthapadmanabhan V, Swanson S, Saini S, Sesay F, Yakovlev V, Florens L, DeCaprio JA, Washburn MP, Dozmorov M, Litovchick L. Cell Cycle. 2019;18:531-551.
Topological Scoring of Protein Interaction Networks
Sardiu ME, Gilmore JM, Groppe BD, Dutta A, Florens L, Washburn MP. Nat Commun. 2019;10:1118. doi: 1110.1038/s41467-41019-09123-y.
Characterization of a metazoan ADA acetyltransferase complex
Soffers JHM, Li X, Saraf A, Seidel CW, Florens L, Washburn MP, Abmayr SM, Workman JL. Nucleic Acids Res. 2019;47:3383-3394.
A chemoproteomic portrait of the oncometabolite fumarate
Kulkarni RA, Bak DW, Wei D, Bergholtz SE, Briney CA, Shrimp JH, Alpsoy A, Thorpe AL, Bavari AE, Crooks DR, Levy M, Florens L, Washburn MP, Frizzell N, Dykhuizen EC, Weerapana E, Linehan WM, Meier JL. Nat Chem Biol. 2019;15:391-400
Host Vesicle Fusion Protein VAPB Is Required for the Nuclear Egress Stage of Herpes Simplex Virus Type-1 (HSV-1) Replication
Saiz-Ros N, Czapiewski R, Epifano I, Stevenson A, Swanson SK, Dixon CR, Zamora DB, McElwee M, Vijayakrishnan S, Richardson CA, Dong L, Kelly DA, Pytowski L, Goldberg MW, Florens L, Graham SV, Schirmer EC. Cells. 2019;8 E120. doi: 110.3390/cells8020120.
The Drosophila Dbf4 ortholog Chiffon forms a complex with Gcn5 that is necessary for histone acetylation and viability
Torres-Zelada EF, Stephenson RE, Alpsoy A, Anderson BD, Swanson SK, Florens L, Dykhuizen EC, Washburn MP, Weake VM. J Cell Sci. 2019;132:jcs.214072.
The ULK1-FBXW5-SEC23B nexus controls autophagy
Jeong YT, Simoneschi D, Keegan S, Melville D, Adler NS, Saraf A, Florens L, Washburn MP, Cavasotto CN, Fenyo D, Cuervo AM, Rossi M, Pagano M. eLife. 2018;7:42253. doi: 42210.47554/eLife.42253.
Probing the Sensitivity of the Orbitrap Lumos Mass Spectrometer using a Standard Reference Protein in a Complex Background
Levy MJ, Washburn MP, Florens L. J Proteome Res. 2018;17:3586-3592.
PTPN14 regulates Roquin2 stability by tyrosine dephosphorylation
Choi J, Saraf A, Florens L, Washburn MP, Busino L. Cell Cycle. 2018;17:2243-2255.
Differential HDAC1/2 network analysis reveals a role for prefoldin/CCT in HDAC1/2 complex assembly
Banks CAS, Miah S, Adams MK, Eubanks CG, Thornton JL, Florens L, Washburn MP. Sci Rep.2018;9:18712.
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Second Special Issue on Methods for Omics Research: Proteome Research and Beyond
Florens L, Dong MQ, LaBaer J. J Proteome Res. 2023;22:1381-1384.
Multiplexed Quantitative Proteomics Analysis of Developing Human Brain Organoids
Florens L, Saraf A, Hao Y, Zhang Y, Wang Y, Parmely TJ, Zhao C, Washburn MP. In: W Wang, Y Wang, and N Rohner, eds. Emerging Model Organisms; 2023;194:325-355.
To Bead or not to Bead? That is the question with cross-linking mass spectrometry.
Florens L, Hao Y, Zhang Y, Wen Z, Banks CAS, Washburn MP. J Biomol Tech : JBT. 2020;31:S24.
New and Improved Tools for the Omics Crew
Florens, L., Dong, M.-Q., LaBaer, J. J Proteome Res 2020;19:2525-2528. doi:10.1021/acs.jproteome.0c00328.
Advancement of mass spectrometry-based proteomics technologies to explore triple negative breast cancer
Miah S, Banks CA, Adams MK, Florens L, Lukong KE, Washburn MP. Mol Biosyst.2016;13:42-55.
Isolation, Proteomic Analysis, and Microscopy Confirmation of the Liver Nuclear Envelope Proteome
Korfali N, Florens L, Schirmer EC. Methods Mol Biol. 2016;1411:3-44.
Use of sequential chemical extractions to purify nuclear membrane proteins for proteomics identification.
Korfali N, Fairley EA, Swanson SK, Florens L, Schirmer EC. Methods Mol Biol. 2009;528:201-225.
Generation and analysis of multidimensional protein identification technology datasets
Swanson SK, Florens L, Washburn MP. Methods Mol Biol. 2009;492:1-20.
Detecting Pathological Pathways of a Complex Disease by a Comparative Analysis of Networks
Florens L, Korfali N, Schirmer EC, Emmert-Streib F, Dehmer M. In: F Emmert-Streib, and M Dehmer, eds. Analysis of Microarray Data: A Network-Based Approach. Weinheim: Wiley-VCH Verlag GmbH & Co. KGaA; 2008:285-305.
Subcellular Fractionation and Proteomics of Nuclear Envelopes
Florens L, Korfali N, Schirmer EC. Methods Mol Biol. 2008;432:117-137.
Genome Comparison and Proteomic Characterization of Thermus thermophilus Bacteriophages P23-45 and P74-26: Siphoviruses with Triplex-forming Sequences and the Longest Known Tails.
Minakhin L, Goel M, Berdygulova Z, Ramanculov E, Florens L, Glazko G, Karamychev VN, Slesarev AI, Kozyavkin SA, Khromov I, Ackermann HW, Washburn M, Mushegian A, Severinov K. J Mol Biol.2008;378:468-480.
Quantitative shotgun proteomics using a protease with broad specificity and normalized spectral abundance factors
Zybailov BL, Florens L, Washburn MP. Mol Biosyst.2007;3:354-360.
Analyzing chromatin remodeling complexes using shotgun proteomics and normalized spectral abundance factors
Florens L, Carozza MJ, Swanson SK, Fournier M, Coleman MK, Workman JL, Washburn MP. Methods.2006;40:303-311.
Proteomic analysis by multidimensional protein identification technology
Florens L, Washburn MP. Methods in Molecular Biology: New and Emerging Proteomics Techniques. Totowa, NJ: Humana Press Inc.; 2006;328:159-175.
The mammalian Mediator complex
Conaway JW, Florens L, Sato S, Tomomori-Sato C, Parmely TJ, Yao T, Swanson SK, Banks CAS, Washburn MP, Conaway RC. FEBS Lett.2005;579:904-908.
