Publications
Publications
Supporting the scientific spirit of transparency, the Stowers Institute for Medical Research makes the data underlying its scientific publications freely accessible to the scientific community. Access to original, unprocessed data allows other scientists to validate and extend findings made by Stowers researchers.
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Alkaline phosphatase-based chromogenic and fluorescence detection method for BaseScope™ In Situ hybridization
Wang Y, Xu W, Maddera L, Tsuchiya D, Thomas N, Yu CR, Parmely T. J Histotechnol. 2019;42:193-201.
An Adult brain atlas reveals broad neuroanatomical changes in independently evolved populations of Mexican cavefish
Loomis C, Peuss R, Jaggard JB, Wang Y, McKinney S, Raftopoulos A, Raftopoulos S, Whu D, Green MR, McGaugh SE, Rohner NE, Keene AC, Duboue ER. Front Neuroanat. 2019;13:88. doi: 10.3389/fnana.2019.00088.
X chromosome and autosomal recombination are differentially sensitive to disruptions in SC maintenance
Billmyre KK, Cahoon CK, Heenan GM, Wesley ER, Yu Z, Unruh JR, Takeo S, Hawley RS. Proc Natl Acad Sci U S A. 2019;116:21641-21650.
PCP and Wnt pathway components act in parallel during zebrafish mechanosensory hair cell orientation
Navajas Acedo J, Voas MG, Alexander R, Woolley T, Unruh JR, Li H, Moens C, Piotrowski T. Nat Commun. 2019;10:3993. doi: 3910.1038/s41467-41019-12005-y.
Wnt and TGF-β coordinate growth and patterning to regulate size-dependent behavior
Arnold CP, Benham-Pyle BW, Lange JJ, Wood CJ, Sánchez Alvarado A. Nature. 2019;572:655-659.
Amyloid-like Assembly Activates a Phosphatase in the Developing Drosophila Embryo
Nil Z, Millan RH, Gerbich T, Leal P, Yu Z, Saraf A, Sardiu M, Lange JJ, Yi K, Unruh J, Slaughter B, Si K. Cell. 2019;178:1403-1420 e1421.
Super-resolution microscopy reveals linkages between ribosomal DNA on heterologous chromosomes
Potapova TA, Unruh JR, Yu Z, Rancati G, Li H, Stampfer MR, Gerton JL. J Cell Biol. 2019;218:2492-2513.
The stoichiometry of the outer kinetochore is modulated by microtubule-proximal regulatory factors
Dhatchinamoorthy K, Unruh JR, Lange JJ, Levy M, Slaughter BD, Gerton JL. J Cell Biol. 2019;218:2124-2135.
Junctional tumor suppressors interact with 14-3-3 proteins to control planar spindle alignment
Nakajima YI, Lee ZT, McKinney SA, Swanson SK, Florens L, Gibson MC. J Cell Biol. 2019;218:1824-1838.
The E3 ubiquitin ligase SINA regulates the assembly and disassembly of the synaptonemal complex in Drosophila females
Hughes SE, Hemenway E, Guo F, Yi K, Yu Z, Hawley RS. PLoS Genet. 2019;15:e1008161. doi: 10.1371/journal.pgen.1008161.
Dopamine receptor antagonists as potential therapeutic agents for ADPKD
Paul P, Ramachandran S, Xia S, Unruh JR, Conkright-Fincham J, Li R. PLoS One. 2019;14:e0216220. doi: 10.1371/journal.pone.0216220.
Yeast centrosome components form a noncanonical LINC complex at the nuclear envelope insertion site.
Chen J, Gardner JM, Yu Z, Smith SE, McKinney S, Slaughter BD, Unruh JR, Jaspersen SL. J Cell Biol. 2019;218:1478-1490.
Distribution of Proteins at the Inner Nuclear Membrane Is Regulated by the Asi1 E3 Ligase in Saccharomyces cerevisiae
Smoyer CJ, Smith SE, Gardner JM, McCroskey S, Unruh JR, Jaspersen SL. Genetics. 2019;211:1269-1282.
Imaging-based assays for investigating functions of the RNA polymerase II elongation factor Elongin and the Elongin ubiquitin ligase
Weems JC, Unruh JR, Slaughter BD, Conaway RC, Conaway JW. Methods. 2019;159-160:157-164.
N-Cadherin-Expressing Bone and Marrow Stromal Progenitor Cells Maintain Reserve Hematopoietic Stem Cells
Zhao M, Tao F, Venkatraman A, Li Z, Smith SE, Unruh J, Chen S, Ward C, Qian P, Perry JM, Marshall H, Wang J, He XC, Li L. Cell Rep. 2019;26:652-669 e656.
Electroporation of short hairpin RNAs for rapid and efficient gene knockdown in the starlet sea anemone, Nematostella vectensis.
Karabulut A, He S, Chen CY, McKinney SA, Gibson MC. Dev Biol. 2019;448:7-15.
A suppressor of a wtf poison-antidote meiotic driver acts via mimicry of the driver’s antidote
Bravo Nunez MA, Lange JJ, Zanders SE. PLoS Genet. 2018;14:e1007836. doi: 1007810.1001371/journal.pgen.1007836.
An axial Hox code controls axial patterning and tissue segmentation in Nematostella vectensis
He S, Del Viso F, Chen CY, Ikmi A, Kroesen AE, Gibson MC. Science. 2018;361:1377-1380.
Antimicrobial peptides modulate long-term memory
Barajas-Azpeleta R, Wu J, Gill J, Welte R, Seidel C, McKinney S, Dissel S, Si K. PLoS Genet. 2018;14:e1007440. doi: 1007410.1001371/journal.pgen.1007440.
DAPI Staining of Whole-Mount Mouse Embryo or Fetal Organs
Sandell L, Inman K, Trainor P. Cold Spring Harb Protoc. 2018;2018:789-792.
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The Stacking Cell Puzzle
Mir M, Nowotarski S. Patterns. 2024;5:101040.
Identification and Localization of Cell Types in the Mouse Olfactory Bulb Using Slide-SeqV2
Fang A, Petentler K, Price A, Malloy S, Maddera C, Russell J, Treese M, Li H, Wang Y, McKinney S, Perera A, Yu CR. Methods Mol Biol. 2023;2710:171-183. Published Erratum Methods Mol Biol. 2023;2710:C1. doi: 10.1007/978-1-0716-3425-7_17.
Serial block-face scanning electron microscopy of Schmidtea mediterranea.
McClain ML, Nowotarski SH. Methods Cell Biol. 2023;177:213-240.
Split-GFP Complementation to Study the Nuclear Membrane Proteome Using Microscopy
Shelton SN, Smith SE, Jaspersen SL. In: MW Goldberg, ed. Methods Mol Biol 2022/04/13 ed. New York, NY: Humana; 2022;2502 205-213.
Superresolution Microscopy for Visualization of Physical Contacts Between Chromosomes at Nanoscale Resolution
Yu Z, Potapova TA. Methods Mol Biol. 2022;2458:359-375.
In Situ Hematopoietic Stem Cell Imaging
Venkatraman A, Smith SE, Pinho S, Zhao M, Li L, Frenette P. Methods Mol Biol. 2021;2185:373-382.
Functional Analysis of the Yeast LINC Complex Using Fluctuation Spectroscopy and Super-Resolution Imaging
Unruh JR, Slaughter BD, Jaspersen SL. Methods Mol Biol: Meiosis.2018;1840:137-161.
The anatomy of a nucleus: As revealed by chromosome painting
Slaughter BD, Hawley RS. PLoS Genet.2018;14:e1007445. doi: 10.1371/journal.pgen.1007445.
Sec66-Dependent Regulation of Yeast Spindle-Pole Body Duplication Through Pom152.
Katta SS, Chen J, Gardner JM, Friederichs JM, Smith SE, Gogol M, Unruh JR, Slaughter BD, Jaspersen SL. Genetics. 2015;201:1479-1495
Immunogold Labeling for Electron Microscopy: Strategy and Problem Solving.
Guo F, Huang BQ. In: ECT Yeung, C Stasolla, MJ Sumner, and BQ Huang, eds. Plant Microtechniques and Protocols: Springer International Publishing; 2015:225-249.
Imaging methodologies for systems biology.
Smith SE, Slaughter BD, Unruh JR. Cell Adh & Migr. 2014;8:468-477.
Visualization of Lipid Droplets in C. elegans by Light and Electron Microscopy.
Mak HY. Methods Cell Biol. 2013;116C:39-51.
Symmetry breaking and polarity establishment during mouse oocyte maturation.
Yi K, Rubinstein B, Li R. Philos Trans R Soc Lond B Biol Sci. 2013;368:20130002.
Quality Control: Putting Protein Aggregates in a Bind.
Unruh JR, Slaughter BD, Li R. Curr Biol. 2013;23:R74-R76.
Reply to Yablonka et al.: Parity in Data Processing is Essential in Correlation Analyses.
Ma L, Qiu Q, Gradwohl S, Scott A, Yu EQ, Alexander R, Wiegraebe W, Yu CR. PNAS. 2012;109:E2918-E2910.
Actin cytoskeleton in cell polarity and asymmetric division during mouse oocyte maturation.
Yi K, Li R. Cytoskeleton (Hoboken). 2012;69:727-737.
Fluorescence fluctuation spectroscopy and imaging methods for examination of dynamic protein interactions in yeast.
Slaughter BD, Unruh JR, Li R. Methods Mol Biol. 2011;759:283-306.
Toward Quantitative "In Vivo Biochemistry" with Fluorescence Fluctuation Spectroscopy.
Slaughter BD, Li R. Mol Biol Cell. 2010;21:4306-4311.
Symmetry breaking in the life cycle of the budding yeast.
Slaughter BD, Smith SE, Li R. Cold Spring Harbor Perspect Biol. 2010;1:a003384.
