Publications
Publications
Supporting the scientific spirit of transparency, the Stowers Institute for Medical Research makes the data underlying its scientific publications freely accessible to the scientific community. Access to original, unprocessed data allows other scientists to validate and extend findings made by Stowers researchers.
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Post-transcription initiation function of the ubiquitous SAGA complex in tissue-specific gene activation.
Weake VM, Dyer JO, Seidel C, Box A, Swanson SK, Peak A, Florens L, Washburn MP, Abmayr SM, Workman JL. Genes Dev. 2011;25:1499-1509.
Combinatorial depletion analysis to assemble the network architecture of the SAGA and ADA chromatin remodeling complexes.
Lee KK, Sardiu ME, Swanson SK, Gilmore JM, Torok M, Grant PA, Florens L, Workman JL, Washburn MP. Mol Syst Biol. 2011;7:503.
Sgf29 binds histone H3K4me2/3 and is required for SAGA complex recruitment and histone H3 acetylation
Bian C, Xu C, Ruan J, Lee KK, Burke TL, Tempel W, Barsyte D, Li J, Wu M, Zhou BO, Fleharty BE, Paulson A, Allali-Hassani A, Zhou JQ, Mer G, Grant PA, Workman JL, Zang J, Min J. EMBO J. 2011;30:2829-2842.
Highly reproducible label free quantitative proteomic analysis of RNA polymerase complexes.
Mosley AL, Sardiu ME, Pattenden SG, Workman JL, Florens L, Washburn MP. Mol Cell Proteomics. 2011;10:M110 000687.
Gcn5 regulates the dissociation of SWI/SNF from chromatin by acetylation of Swi2/Snf2.
Kim JH, Saraf A, Florens L, Washburn M, Workman JL. Genes Dev. 2010;24:2766-2771.
Psh1 Is an E3 Ubiquitin Ligase that Targets the Centromeric Histone Variant Cse4.
Hewawasam G, Shivaraju M, Mattingly M, Venkatesh S, Martin-Brown S, Florens L, Workman JL, Gerton JL. Mol Cell. 2010;40:444-454.
Features of cryptic promoters and their varied reliance on bromodomain-containing factors.
Pattenden SG, Gogol MM, Workman JL. PLoS One. 2010;5:e12927.
Heterochromatin protein 1 (HP1) connects the FACT histone chaperone complex to the phosphorylated CTD of RNA polymerase II.
Kwon SH, Florens L, Swanson SK, Washburn MP, Abmayr SM, Workman JL. Genes Dev. 2010;24:2133-2145.
The ATAC Acetyltransferase Complex Coordinates MAP Kinases to Regulate JNK Target Genes.
Suganuma T, Mushegian A, Swanson SK, Abmayr SM, Florens L, Washburn MP, Workman JL. Cell. 2010;142:726-736.
Phosphorylated Pol II CTD recruits multiple HDACs, including Rpd3C(S), for methylation-dependent deacetylation of ORF nucleosomes.
Govind CK, Qiu H, Ginsburg DS, Ruan C, Hofmeyer K, Hu C, Swaminathan V, Workman JL, Li B, Hinnebusch AG. Mol Cell. 2010;39:234-246.
Rere controls retinoic acid signalling and somite bilateral symmetry
Vilhais-Neto GC, Maruhashi M, Smith KT, Vasseur-Cognet M, Peterson AS, Workman JL, Pourquie O. Nature. 2010;463:953-957.
Deacetylase Inhibitors Dissociate the Histone-Targeting ING2 Subunit from the Sin3 Complex.
Smith KT, Martin-Brown SA, Florens L, Washburn MP, Workman JL. Chem Biol. 2010;17:65-74.
A novel histone fold domain-containing protein that replaces TAF6 in Drosophila SAGA is required for SAGA-dependent gene expression.
Weake VM, Swanson SK, Mushegian A, Florens L, Washburn MP, Abmayr SM, Workman JL. Genes Dev. 2009;23:2818-2823.
Determining protein complex connectivity using a probabilistic deletion network derived from quantitative proteomics.
Sardiu ME, Gilmore JM, Carrozza MJ, Li B, Workman JL, Florens L, Washburn MP. PLoS One. 2009;4:e7310.
Cse4 is part of an octameric nucleosome in budding yeast.
Camahort R, Shivaraju M, Mattingly M, Li B, Nakanishi S, Zhu D, Shilatifard A, Workman JL, Gerton JL. Mol Cell. 2009;35:794-805.
Activator-binding domains of the SWI/SNF chromatin remodeling complex characterized in vitro are required for its recruitment to promoters in vivo.
Ferreira ME, Prochasson P, Berndt KD, Workman JL, Wright APH. FEBS J. 2009;276:2557-2565.
Rtr1 is a CTD phosphatase that regulates RNA polymerase II during the transition from serine 5 to serine 2 phosphorylation
Mosley AL, Pattenden SG, Carey M, Venkatesh S, Gilmore JM, Florens L, Workman JL, Washburn MP. Mol Cell. 2009;34:168-178.
Histone H3 lysine 36 dimethylation (H3K36me2) is sufficient to recruit the Rpd3s histone deacetylase complex and to repress spurious transcription.
Li B, Jackson J, Simon MD, Fleharty B, Gogol M, Seidel C, Workman JL, Shilatifard A. J Biol Chem. 2009;284:7970-7976.
Yeast Sgf73/Ataxin-7 serves to anchor the deubiquitination module into both SAGA and Slik(SALSA) HAT complexes.
Lee KK, Swanson SK, Florens L, Washburn MP, Workman JL. Epigenetics Chromatin. 2009;2:2.
ATAC is a double histone acetyltransferase complex that stimulates nucleosome sliding
Suganuma T, Gutierrez JL, Li B, Florens L, Swanson SK, Washburn MP, Abmayr SM, Workman JL. Nat Struct Mol Biol. 2008;15:364-372.
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Histone Ubiquitination.
Weake VM, Workman JL. In: RA Bradshaw, and EA Dennis, eds. Handbook of Cell Signaling. 2nd ed: Oxford: Academic Press; 2009:2449-2460.
Hit and run: X marks the spot!
Weake VM, Workman JL. Nat Struct Mol Biol. 2009;16:801-803.
Histone deacetylase inhibitors: Anticancer compounds
Smith KT, Workman JL. Int J Biochem Cell Biol. 2009;41:21-25.
The heterochromatin protein 1 (HP1) family: put away a bias toward HP1
Kwon SH, Workman JL. Mol Cells.2008;26:217-227.
Diverse functions of WD40 repeat proteins in histone recognition
Suganuma T, Pattenden SG, Workman JL. Genes Dev.2008;22:1265-1268.
Crosstalk among Histone Modifications
Suganuma T, Workman JL. Cell.2008;135:604-607.
Histone Ubiquitination: Triggering Gene Activity
Weake VM, Workman JL. Mol Cell.2008;29:653-663.
Clearing the Way for Unpaused Polymerases
Weake VM, Workman JL. Cell.2008;134:16-18.
New nomenclature for chromatin-modifying enzymes
Allis CD, Berger SL, Cote J, Dent S, Jenuwien T, Kouzarides T, Pillus L, Reinberg D, Shi Y, Shiekhattar R, Shilatifard A, Workman J, Zhang Y. Cell.2007;131:633-636.
Histone Variants and Complexes Involved in Their Exchange
Kusch T, Workman JL. Chromatin and Disease: Subcellular Biochemistry. New York: Springer 2007;41:91-110.
Histone acetyltransferase complexes: one size doesn't fit all
Lee KK, Workman JL. Nat Rev Mol Cell Biol.2007;8:284-295.
The Role of Chromatin During Transcription
Li B, Carey M, Workman JL. Cell.2007;128:707-719.
Analyzing chromatin remodeling complexes using shotgun proteomics and normalized spectral abundance factors
Florens L, Carozza MJ, Swanson SK, Fournier M, Coleman MK, Workman JL, Washburn MP. Methods.2006;40:303-311.
Histone H4 lysine 16 acetylation breaks the genome's silence
Shia WJ, Pattenden SG, Workman JL. Genome Biol.2006;7:217.
Nucleosome displacement in transcription
Workman JL. Genes Dev. 2006;20:2009-2017.
Histones: should I stay or should I go?
Li B, Ruan C, Workman JL. Genome Biol. 2005;6:306. doi: 310.1186/gb-2005-1186-1182-1306.
In and out: histone variant exchange in chromatin
Jin J, Cai Y, Li B, Conaway RC, Workman JL, Conaway JW, Kusch T. Trends Biochem Sci.2005;30:680-687.
Chromatin dynamics rule the genome
Pattenden SG, Chandy MJ, Gutierrez JL, Workman JL. Genome Biol.2005;6:355.
Global nucleosome distribution and the regulation of transcription in yeast
Ercan S, Carrozza MJ, Workman JL. Genome Biol.2004;5:243.
Histone H3 variants and modifications on transcribed genes
Workman JL, Abmayr SM. Proc Natl Acad Sci U S A. 2004;101:1429-1430.
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