Publications
Publications
Supporting the scientific spirit of transparency, the Stowers Institute for Medical Research makes the data underlying its scientific publications freely accessible to the scientific community. Access to original, unprocessed data allows other scientists to validate and extend findings made by Stowers researchers.
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Dynamic regulation of Nanog and stem cell-signaling pathways by Hoxa1 during early neuro-ectodermal differentiation of ES cells
De Kumar B, Parker HJ, Parrish ME, Lange JJ, Slaughter BD, Unruh JR, Paulson A, Krumlauf R. Proc Natl Acad Sci U S A.2017;114:5838-5845.
Cell-Cycle-Coupled Oscillations in Apical Polarity and Intercellular Contact Maintain Order in Embryonic Epithelia
Ragkousi K, Marr K, McKinney S, Ellington L, Gibson MC. Curr Biol. 2017;27:1381-1386.
Cockayne syndrome B protein regulates recruitment of the Elongin A ubiquitin ligase to sites of DNA damage
Weems JC, Slaughter BD, Unruh JR, Boeing S, Hall SM, McLaird MB, Yasukawa T, Aso T, Svejstrup JQ, Conaway JW, Conaway RC. Cockayne syndrome B protein regulates recruitment of the Elongin A ubiquitin ligase to sites of DNA damage. J Biol Chem.2017;292:6431-6437.
Proliferation-independent regulation of organ size by Fgf/Notch signaling
Kozlovskaja-Gumbriene A, Yi R, Alexander R, Aman A, Jiskra R, Nagelberg D, Knaut H, McClain M, Piotrowski T. Proliferation-independent regulation of organ size by Fgf/Notch signaling. eLife.2017;6: e21049. doi: 21010.27554/eLife.21049.
Embryonic origin of adult stem cells required for tissue homeostasis and regeneration
Davies EL, Lei K, Seidel CW, Kroesen AE, McKinney SA, Guo L, Robb SM, Ross EJ, Gotting K, Sanchez Alvarado A. eLife.2017;6:e21052. doi: 21010.27554/eLife.21052.
Immediate perception of a reward is distinct from the reward's long-term salience
McGinnis JP, Jiang H, Agha MA, Perez Sanchez C, Lange JJ, Yu Z, Marion-Poll F, Si K. eLife.2016;5:e22283. doi: 22210.27554/eLife.22283.
A Putative Biochemical Engram of Long-Term Memory
Li L, Sanchez CP, Slaughter BD, Zhao Y, Khan MR, Unruh JR, Rubinstein B, Si K. Curr Biol.2016;26:3143-3156.
Localized Gene Induction By Infrared-Mediated Heat Shock
Venero Galanternik M, Nikaido M, Yu Z, McKinney SA, Piotrowski T. Zebrafish.2016;13:537-540.
Analysis of membrane proteins localizing to the inner nuclear envelope in living cells
Smoyer CJ, Katta SS, Gardner JM, Stoltz L, McCroskey S, Bradford WD, McClain M, Smith SE, Slaughter BD, Unruh JR, Jaspersen SL. J Cell Biol. 2016;215:575-590.
Egf signaling directs neoblast repopulation by regulating asymmetric cell division in planarians
Lei K, Thi-Kim Vu H, Mohan RD, McKinney SA, Seidel CW, Alexander R, Gotting K, Workman JL, Sánchez Alvarado A. Dev Cell. 2016;38:413-429.
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Pathogenic shifts in endogenous microbiota impede tissue regeneration via distinct activation of TAK1/MKK/p38
Arnold CP, Merryman MS, Harris-Arnold A, McKinney SA, Seidel CW, Loethen S, Proctor KN, Guo L, Sanchez Alvarado A. eLife. 2016;5:e16793. doi: 16710.17554/eLife.16793.
Crucial Roles of the Arp2/3 Complex during Mammalian Corticogenesis
Wang PS, Chou FS, Ramachandran S, Xia S, Chen HY, Guo F, Suraneni P, Maher BJ, Li R. Development. 2016;143:2741-2752.
WDR76 Co-Localizes with Heterochromatin Related Proteins and Rapidly Responds to DNA Damage.
Gilmore JM, Sardiu ME, Groppe BD, Thornton JL, Liu X, Dayebgadoh G, Banks CA, Slaughter BD, Unruh JR, Workman JL, Florens L, Washburn MP. PloS One. 2016;11:e0155492. doi: 0155410.0151371/journal.pone.0155492.
Molecular Basis of Orb2 Amyloidogenesis and Blockade of Memory Consolidation.
Hervas R, Li L, Majumdar A, Fernandez-Ramirez MD, Unruh JR, Slaughter BD, Galera-Prat A, Santana E, Suzuki M, Nagai Y, Bruix M, Casas-Tinto S, Menendez M, Laurents DV, Si K, Carrion-Vazquez M. PLoS Biol.2016;14:e1002361. doi: 10.1371/journal.pbio.1002361.
Intracellular chloride concentration of the mouse vomeronasal neuron
Kim S, Ma L, Unruh J, McKinney S, Yu CR. BMC Neurosci. 2015;16:90. doi: 10.1186/s12868-015-0230-y.
Karyotyping human and mouse cells using probes from single-sorted chromosomes and open source software.
Potapova TA, Unruh JR, Box AC, Bradford WD, Seidel CW, Slaughter BD, Sivagnanam S, Wu Y, Li R. BioTechniques. 2015;59:335-346.
Amyloidogenic Oligomerization Transforms Drosophila Orb2 from a Translation Repressor to an Activator.
Khan MR, Li L, Perez-Sanchez C, Saraf A, Florens L, Slaughter BD, Unruh JR, Si K. Cell. 2015;163:1468-1483.
The Dlk1-Gtl2 Locus Preserves LT-HSC Function by Inhibiting the PI3K-mTOR Pathway to Restrict Mitochondrial Metabolism.
Qian P, He XC, Paulson A, Li Z, Tao F, Perry JM, Guo F, Zhao M, Zhi L, Venkatraman A, Haug JS, Parmely T, Li H, Dobrowsky RT, Ding WX, Kono T, Ferguson-Smith AC, Li L. Cell Stem Cell. 2016;18:214-228.
Egr-5 is a post-mitotic regulator of planarian epidermal differentiation.
Tu KC, Cheng LC, Tk Vu H, Lange JJ, McKinney SA, Seidel CW, Sanchez Alvarado A. eLife. 2015;4:e10501. doi: 10510.17554/eLife.10501.
Vilya, a component of the recombination nodule, is required for meiotic double-strand break formation in Drosophila.
Lake CM, Nielsen RJ, Guo F, Unruh JR, Slaughter BD, Hawley RS. eLife. 2015;4:e08287. doi: 08210.07554/eLife.08287.
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The Stacking Cell Puzzle
Mir M, Nowotarski S. Patterns. 2024;5:101040.
Identification and Localization of Cell Types in the Mouse Olfactory Bulb Using Slide-SeqV2
Fang A, Petentler K, Price A, Malloy S, Maddera C, Russell J, Treese M, Li H, Wang Y, McKinney S, Perera A, Yu CR. Methods Mol Biol. 2023;2710:171-183. Published Erratum Methods Mol Biol. 2023;2710:C1. doi: 10.1007/978-1-0716-3425-7_17.
Serial block-face scanning electron microscopy of Schmidtea mediterranea.
McClain ML, Nowotarski SH. Methods Cell Biol. 2023;177:213-240.
Split-GFP Complementation to Study the Nuclear Membrane Proteome Using Microscopy
Shelton SN, Smith SE, Jaspersen SL. In: MW Goldberg, ed. Methods Mol Biol 2022/04/13 ed. New York, NY: Humana; 2022;2502 205-213.
Superresolution Microscopy for Visualization of Physical Contacts Between Chromosomes at Nanoscale Resolution
Yu Z, Potapova TA. Methods Mol Biol. 2022;2458:359-375.
In Situ Hematopoietic Stem Cell Imaging
Venkatraman A, Smith SE, Pinho S, Zhao M, Li L, Frenette P. Methods Mol Biol. 2021;2185:373-382.
Functional Analysis of the Yeast LINC Complex Using Fluctuation Spectroscopy and Super-Resolution Imaging
Unruh JR, Slaughter BD, Jaspersen SL. Methods Mol Biol: Meiosis.2018;1840:137-161.
The anatomy of a nucleus: As revealed by chromosome painting
Slaughter BD, Hawley RS. PLoS Genet.2018;14:e1007445. doi: 10.1371/journal.pgen.1007445.
Sec66-Dependent Regulation of Yeast Spindle-Pole Body Duplication Through Pom152.
Katta SS, Chen J, Gardner JM, Friederichs JM, Smith SE, Gogol M, Unruh JR, Slaughter BD, Jaspersen SL. Genetics. 2015;201:1479-1495
Immunogold Labeling for Electron Microscopy: Strategy and Problem Solving.
Guo F, Huang BQ. In: ECT Yeung, C Stasolla, MJ Sumner, and BQ Huang, eds. Plant Microtechniques and Protocols: Springer International Publishing; 2015:225-249.
Imaging methodologies for systems biology.
Smith SE, Slaughter BD, Unruh JR. Cell Adh & Migr. 2014;8:468-477.
Visualization of Lipid Droplets in C. elegans by Light and Electron Microscopy.
Mak HY. Methods Cell Biol. 2013;116C:39-51.
Symmetry breaking and polarity establishment during mouse oocyte maturation.
Yi K, Rubinstein B, Li R. Philos Trans R Soc Lond B Biol Sci. 2013;368:20130002.
Quality Control: Putting Protein Aggregates in a Bind.
Unruh JR, Slaughter BD, Li R. Curr Biol. 2013;23:R74-R76.
Reply to Yablonka et al.: Parity in Data Processing is Essential in Correlation Analyses.
Ma L, Qiu Q, Gradwohl S, Scott A, Yu EQ, Alexander R, Wiegraebe W, Yu CR. PNAS. 2012;109:E2918-E2910.
Actin cytoskeleton in cell polarity and asymmetric division during mouse oocyte maturation.
Yi K, Li R. Cytoskeleton (Hoboken). 2012;69:727-737.
Fluorescence fluctuation spectroscopy and imaging methods for examination of dynamic protein interactions in yeast.
Slaughter BD, Unruh JR, Li R. Methods Mol Biol. 2011;759:283-306.
Toward Quantitative "In Vivo Biochemistry" with Fluorescence Fluctuation Spectroscopy.
Slaughter BD, Li R. Mol Biol Cell. 2010;21:4306-4311.
Symmetry breaking in the life cycle of the budding yeast.
Slaughter BD, Smith SE, Li R. Cold Spring Harbor Perspect Biol. 2010;1:a003384.
