Publications
Publications
Supporting the scientific spirit of transparency, the Stowers Institute for Medical Research makes the data underlying its scientific publications freely accessible to the scientific community. Access to original, unprocessed data allows other scientists to validate and extend findings made by Stowers researchers.
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Serine and SAM Responsive Complex SESAME Regulates Histone Modification Crosstalk by Sensing Cellular Metabolism.
Li S, Swanson SK, Gogol M, Florens L, Washburn MP, Workman JL, Suganuma T. Mol Cell. 2015;60:408-421.
TRIM29 regulates the assembly of DNA repair proteins into damaged chromatin.
Masuda Y, Takahashi H, Sato S, Tomomori-Sato C, Saraf A, Washburn MP, Florens L, Conaway RC, Conaway JW, Hatakeyama S. Nat Commun. 2015;6:7299. doi: 7210.1038/ncomms8299.
Assembly of the Elongin A Ubiquitin Ligase Is Regulated by Genotoxic and Other Stresses.
Weems JC, Slaughter BD, Unruh JR, Hall SM, McLaird MB, Gilmore JM, Washburn MP, Florens L, Yasukawa T, Aso T, Conaway JW, Conaway RC. J Biol Chem. 2015;290:15030-15041.
CyclinA2-Cyclin-dependent Kinase Regulates SAMHD1 Protein Phosphohydrolase Domain.
Yan J, Hao C, DeLucia M, Swanson S, Florens L, Washburn MP, Ahn J, Skowronski J. J Biol Chem. 2015;209:13279-13292.
Improving label-free quantitative proteomics strategies by distributing shared peptides and stabilizing variance.
Zhang Y, Wen Z, Washburn MP, Florens L. Anal Chem. 2015;87:4749-4756.
Proteins interacting with cloning scars: a source of false positive protein-protein interactions.
Banks CAS, Boanca G, Lee ZT, Florens L, Washburn MP. Sci Rep. 2015;5:8530. doi:10.1038/srep08530
Zic2 is an enhancer-binding factor required for embryonic stem cell specification.
Luo Z, Gao X, Lin C, Smith ER, Marshall SA, Swanson SK, Florens L, Washburn MP, Shilatifard A. Mol Cell. 2015;57:685-694.
The Integrator complex controls the termination of transcription at diverse classes of gene targets.
Skaar JR, Ferris AL, Wu X, Saraf A, Khanna KK, Florens L, Washburn MP, Hughes SH, Pagano M. Cell Res. 2015;25:288-305.
Characterization of Human Cyclin-Dependent Kinase 12 (CDK12) and CDK13 Complexes in C-Terminal Domain Phosphorylation, Gene Transcription, and RNA Processing.
Liang K, Gao X, Gilmore JM, Florens L, Washburn MP, Smith E, Shilatifard A. Mol Cell Biol. 2015;35:928-938.
Degradation of Cep68 and PCNT cleavage mediate Cep215 removal from the PCM to allow centriole separation, disengagement and licensing.
Pagan JK, Marzio A, Jones MJ, Saraf A, Jallepalli PV, Florens L, Washburn MP, Pagano M. Nat Cell Biol. 2015;17:31-43.
Conserved abundance and topological features in chromatin-remodeling protein interaction networks.
Sardiu ME, Gilmore JM, Groppe BD, Herman D, Ramisetty SR, Cai Y, Jin J, Conaway RC, Conaway JW, Florens L, Washburn MP. EMBO Rep. 2015;16:116-126.
Swi/Snf dynamics on stress-responsive genes is governed by competitive bromodomain interactions.
Dutta A, Gogol M, Kim JH, Smolle M, Venkatesh S, Gilmore J, Florens L, Washburn MP, Workman JL. Genes Dev. 2014;29:2314-2330.
The membrane-associated proteins FCHo and SGIP are allosteric activators of the AP2 clathrin adaptor complex.
Hollopeter G, Lange JJ, Zhang Y, Vu TN, Gu M, Ailion M, Lambie EJ, Slaughter BD, Unruh JR, Florens L, Jorgensen EM. eLife (Cambridge). 2014;3:e03648. doi: 10.7554/eLife.03648.
Phosphorylation by Casein Kinase 2 Facilitates Psh1 Protein-assisted Degradation of Cse4 Protein.
Hewawasam GS, Mattingly M, Venkatesh S, Zhang Y, Florens L, Workman JL, Gerton JL. J Biol Chem. 2014;289:29297-29309.
Histone H3 lysine-to-methionine mutants as a paradigm to study chromatin signaling.
Herz HM, Morgan M, Gao X, Jackson J, Rickels R, Swanson SK, Florens L, Washburn MP, Eissenberg JC, Shilatifard A. Science. 2014;345:1065-1070.
Suberoylanilide Hydroxamic Acid (SAHA)-Induced Dynamics of a Human Histone Deacetylase Protein Interaction Network.
Sardiu ME, Smith KT, Groppe BD, Gilmore JM, Saraf A, Egidy R, Peak A, Seidel CW, Florens L, Workman JL, Washburn MP. Mol Cell Proteomics. 2014;13:3114-3125.
Controlling for gene expression changes in transcription factor protein networks.
Banks CA, Lee ZT, Boanca G, Lakshminarasimhan M, Groppe BD, Wen Z, Hattem GL, Seidel CW, Florens L, Washburn MP. Mol Cell Proteomics. 2014;13:1510-1522.
Analysis of the heterochromatin protein 1 (HP1) interactome in Drosophila.
Ryu HW, Lee DH, Florens L, Swanson SK, Washburn MP, Kwon SH. J Proteomics. 2014:137-147.
The cohesin acetyltransferase Eco1 coordinates rDNA replication and transcription.
Lu S, Lee KK, Harris B, Xiong B, Bose T, Saraf A, Hattem G, Florens L, Seidel C, Gerton JL. EMBO Rep. 2014;15:609-617.
Contribution of Orb2A Stability in Regulated Amyloid-Like Oligomerization of Drosophila Orb2.
White-Grindley E, Li L, Mohammad Khan R, Ren F, Saraf A, Florens L, Si K. PLoS Biol. 2014;12:e1001786.
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Second Special Issue on Methods for Omics Research: Proteome Research and Beyond
Florens L, Dong MQ, LaBaer J. J Proteome Res. 2023;22:1381-1384.
Multiplexed Quantitative Proteomics Analysis of Developing Human Brain Organoids
Florens L, Saraf A, Hao Y, Zhang Y, Wang Y, Parmely TJ, Zhao C, Washburn MP. In: W Wang, Y Wang, and N Rohner, eds. Emerging Model Organisms; 2023;194:325-355.
To Bead or not to Bead? That is the question with cross-linking mass spectrometry.
Florens L, Hao Y, Zhang Y, Wen Z, Banks CAS, Washburn MP. J Biomol Tech : JBT. 2020;31:S24.
New and Improved Tools for the Omics Crew
Florens, L., Dong, M.-Q., LaBaer, J. J Proteome Res 2020;19:2525-2528. doi:10.1021/acs.jproteome.0c00328.
Advancement of mass spectrometry-based proteomics technologies to explore triple negative breast cancer
Miah S, Banks CA, Adams MK, Florens L, Lukong KE, Washburn MP. Mol Biosyst.2016;13:42-55.
Isolation, Proteomic Analysis, and Microscopy Confirmation of the Liver Nuclear Envelope Proteome
Korfali N, Florens L, Schirmer EC. Methods Mol Biol. 2016;1411:3-44.
Use of sequential chemical extractions to purify nuclear membrane proteins for proteomics identification.
Korfali N, Fairley EA, Swanson SK, Florens L, Schirmer EC. Methods Mol Biol. 2009;528:201-225.
Generation and analysis of multidimensional protein identification technology datasets
Swanson SK, Florens L, Washburn MP. Methods Mol Biol. 2009;492:1-20.
Detecting Pathological Pathways of a Complex Disease by a Comparative Analysis of Networks
Florens L, Korfali N, Schirmer EC, Emmert-Streib F, Dehmer M. In: F Emmert-Streib, and M Dehmer, eds. Analysis of Microarray Data: A Network-Based Approach. Weinheim: Wiley-VCH Verlag GmbH & Co. KGaA; 2008:285-305.
Subcellular Fractionation and Proteomics of Nuclear Envelopes
Florens L, Korfali N, Schirmer EC. Methods Mol Biol. 2008;432:117-137.
Genome Comparison and Proteomic Characterization of Thermus thermophilus Bacteriophages P23-45 and P74-26: Siphoviruses with Triplex-forming Sequences and the Longest Known Tails.
Minakhin L, Goel M, Berdygulova Z, Ramanculov E, Florens L, Glazko G, Karamychev VN, Slesarev AI, Kozyavkin SA, Khromov I, Ackermann HW, Washburn M, Mushegian A, Severinov K. J Mol Biol.2008;378:468-480.
Quantitative shotgun proteomics using a protease with broad specificity and normalized spectral abundance factors
Zybailov BL, Florens L, Washburn MP. Mol Biosyst.2007;3:354-360.
Analyzing chromatin remodeling complexes using shotgun proteomics and normalized spectral abundance factors
Florens L, Carozza MJ, Swanson SK, Fournier M, Coleman MK, Workman JL, Washburn MP. Methods.2006;40:303-311.
Proteomic analysis by multidimensional protein identification technology
Florens L, Washburn MP. Methods in Molecular Biology: New and Emerging Proteomics Techniques. Totowa, NJ: Humana Press Inc.; 2006;328:159-175.
The mammalian Mediator complex
Conaway JW, Florens L, Sato S, Tomomori-Sato C, Parmely TJ, Yao T, Swanson SK, Banks CAS, Washburn MP, Conaway RC. FEBS Lett.2005;579:904-908.
