Publications
Publications
Supporting the scientific spirit of transparency, the Stowers Institute for Medical Research makes the data underlying its scientific publications freely accessible to the scientific community. Access to original, unprocessed data allows other scientists to validate and extend findings made by Stowers researchers.
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Structured illumination with particle averaging reveals novel roles for yeast centrosome components during duplication.
Burns S, Avena JS, Unruh JR, Yu Z, Smith SE, Slaughter BD, Winey M, Jaspersen SL. eLife. 2015;4. doi: 10.7554/eLife.08586.
Regeneration of Sensory Hair Cells Requires Localized Interactions between the Notch and Wnt Pathways.
Romero-Carvajal A, Navajas Acedo J, Jiang L, Kozlovskaja-Gumbriene A, Alexander R, Li H, Piotrowski T. Dev Cell. 2015;34:267-282.
Stem cells and fluid flow drive cyst formation in an invertebrate excretory organ.
Thi-Kim Vu H, Rink JC, McKinney SA, McClain M, Lakshmanaperumal N, Alexander R, Sánchez Alvarado A. eLife. 2015;4:e07405. doi: 07410.07554/eLife.07405.
Analysis of dynamic changes in retinoid-induced transcription and epigenetic profiles of murine Hox clusters in ES cells.
De Kumar B, Parrish ME, Slaughter BD, Unruh JR, Gogol M, Seidel C, Paulson A, Li H, Gaudenz K, Peak A, McDowell W, Fleharty B, Ahn Y, Lin C, Smith E, Shilatifard A, Krumlauf R. Genome Res. 2015;25:1229-1243.
Assembly of the Elongin A Ubiquitin Ligase Is Regulated by Genotoxic and Other Stresses.
Weems JC, Slaughter BD, Unruh JR, Hall SM, McLaird MB, Gilmore JM, Washburn MP, Florens L, Yasukawa T, Aso T, Conaway JW, Conaway RC. J Biol Chem. 2015;290:15030-15041.
Live Imaging Provides New Insights on Dynamic F-Actin Filopodia and Differential Endocytosis during Myoblast Fusion in Drosophila.
Haralalka S, Shelton C, Cartwright HN, Guo F, Trimble R, Kumar RP, Abmayr SM. PLoS One. 2014;9:e114126.
TALEN and CRISPR/Cas9-mediated genome editing in the early-branching metazoan Nematostella vectensis.
Ikmi A, McKinney SA, Delventhal KM, Gibson MC. Nat Commun. 2014;5:5486, doi10.1038/ncomms6486.
Licensing of Yeast Centrosome Duplication Requires Phosphoregulation of Sfi1.
Avena JS, Burns S, Yu Z, Ebmeier CC, Old WM, Jaspersen SL, Winey M. PLoS Genet. 2014;10:e1004666.
Organelle-based aggregation and retention of damaged proteins in asymmetrically dividing cells.
Zhou C, Slaughter BD, Unruh JR, Guo F, Yu Z, Mickey K, Narkar A, Ross RT, McClain M, Li R. Cell. 2014;159:530-542.
Corolla is a novel protein that contributes to the architecture of the synaptonemal complex of Drosophila.
Collins KA, Unruh JR, Slaughter BD, Yu Z, Lake CM, Nielsen RJ, Box KS, Miller DE, Blumenstiel JP, Perera AG, Malanowski KE, Hawley RS. Genetics. 2014;198:219-228.
Selective amputation of the pharynx identifies a FoxA-dependent regeneration program in planaria.
Adler CE, Seidel CW, McKinney SA, Sanchez Alvarado A. eLife. 2014;3:e02238. doi: 10.7554/eLife.02238.
The SUN protein Mps3 controls Ndc1 distribution and function on the nuclear membrane.
Chen J, Smoyer CJ, Slaughter BD, Unruh JR, Jaspersen SL. J Cell Biol. 2014;204:523-539.
Cohesion promotes nucleolar structure and function.
Harris B, Bose T, Lee KK, Wang F, Lu S, Ross RT, Zhang Y, French SL, Beyer AL, Slaughter BD, Unruh JR, Gerton JL. Mol Biol Cell. 2014;25:337-346.
Independence of symmetry breaking on Bem1-mediated autocatalytic activation of Cdc42.
Smith SE, Rubinstein B, Mendes Pinto I, Slaughter BD, Unruh JR, Li R. J Cell Biol. 2013;202:1091-1106.
Epithelial junctions maintain tissue architecture by directing planar spindle orientation.
Nakajima Y, Meyer EJ, Kroesen A, McKinney SA, Gibson MC. Nature. 2013;500:359-362.
Isolation and characterization of intestinal stem cells based on surface marker combinations and colony-formation assay.
Wang F, Scoville D, He XC, Mahe MM, Box A, Perry JM, Smith NR, Lei NY, Davies PS, Fuller MK, Haug JS, McClain M, Gracz AD, Ding S, Stelzner M, Dunn JC, Magness ST, Wong MH, Martin MG, Helmrath M, Li L. Gastroenterology. 2013;145:383-395 e321.
Correction of bleaching artifacts in high content fluorescence correlation spectroscopy (HCS-FCS) data.
Lange JJ, Wood CJ, Marshall WA, Maddera LE, Yu QE, Bradford WD, Slaughter BR, Unruh JR, Wiegraebe W. Proceedings SPIE; 2013;859006. doi:10.1117/12.2005205.
Binding of Drosophila Polo kinase to its regulator Matrimony is noncanonical and involves two separate functional domains.
Bonner AM, Hughes SE, Chisholm JA, Smith SK, Slaughter BD, Unruh JR, Collins KA, Friederichs JM, Florens L, Swanson SK, Pelot MC, Miller DE, Washburn MP, Jaspersen SL, Hawley RS. Proc Natl Acad Sci U S A. 2013;110:E1222-1231.
Sequential actin-based pushing forces drive meiosis I chromosome migration and symmetry breaking in oocytes.
Yi K, Rubinstein B, Unruh JR, Guo F, Slaughter BD, Li R. J Cell Biol. 2013;200:567-576.
Defective FGF signaling causes coloboma formation and disrupts retinal neurogenesis.
Chen S, Li H, Gaudenz K, Paulson A, Guo F, Trimble R, Peak A, Seidel C, Deng C, Furuta Y, Xie T. Cell Res. 2013;23:254-273.
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The Stacking Cell Puzzle
Mir M, Nowotarski S. Patterns. 2024;5:101040.
Identification and Localization of Cell Types in the Mouse Olfactory Bulb Using Slide-SeqV2
Fang A, Petentler K, Price A, Malloy S, Maddera C, Russell J, Treese M, Li H, Wang Y, McKinney S, Perera A, Yu CR. Methods Mol Biol. 2023;2710:171-183. Published Erratum Methods Mol Biol. 2023;2710:C1. doi: 10.1007/978-1-0716-3425-7_17.
Serial block-face scanning electron microscopy of Schmidtea mediterranea.
McClain ML, Nowotarski SH. Methods Cell Biol. 2023;177:213-240.
Split-GFP Complementation to Study the Nuclear Membrane Proteome Using Microscopy
Shelton SN, Smith SE, Jaspersen SL. In: MW Goldberg, ed. Methods Mol Biol 2022/04/13 ed. New York, NY: Humana; 2022;2502 205-213.
Superresolution Microscopy for Visualization of Physical Contacts Between Chromosomes at Nanoscale Resolution
Yu Z, Potapova TA. Methods Mol Biol. 2022;2458:359-375.
In Situ Hematopoietic Stem Cell Imaging
Venkatraman A, Smith SE, Pinho S, Zhao M, Li L, Frenette P. Methods Mol Biol. 2021;2185:373-382.
Functional Analysis of the Yeast LINC Complex Using Fluctuation Spectroscopy and Super-Resolution Imaging
Unruh JR, Slaughter BD, Jaspersen SL. Methods Mol Biol: Meiosis.2018;1840:137-161.
The anatomy of a nucleus: As revealed by chromosome painting
Slaughter BD, Hawley RS. PLoS Genet.2018;14:e1007445. doi: 10.1371/journal.pgen.1007445.
Sec66-Dependent Regulation of Yeast Spindle-Pole Body Duplication Through Pom152.
Katta SS, Chen J, Gardner JM, Friederichs JM, Smith SE, Gogol M, Unruh JR, Slaughter BD, Jaspersen SL. Genetics. 2015;201:1479-1495
Immunogold Labeling for Electron Microscopy: Strategy and Problem Solving.
Guo F, Huang BQ. In: ECT Yeung, C Stasolla, MJ Sumner, and BQ Huang, eds. Plant Microtechniques and Protocols: Springer International Publishing; 2015:225-249.
Imaging methodologies for systems biology.
Smith SE, Slaughter BD, Unruh JR. Cell Adh & Migr. 2014;8:468-477.
Visualization of Lipid Droplets in C. elegans by Light and Electron Microscopy.
Mak HY. Methods Cell Biol. 2013;116C:39-51.
Symmetry breaking and polarity establishment during mouse oocyte maturation.
Yi K, Rubinstein B, Li R. Philos Trans R Soc Lond B Biol Sci. 2013;368:20130002.
Quality Control: Putting Protein Aggregates in a Bind.
Unruh JR, Slaughter BD, Li R. Curr Biol. 2013;23:R74-R76.
Reply to Yablonka et al.: Parity in Data Processing is Essential in Correlation Analyses.
Ma L, Qiu Q, Gradwohl S, Scott A, Yu EQ, Alexander R, Wiegraebe W, Yu CR. PNAS. 2012;109:E2918-E2910.
Actin cytoskeleton in cell polarity and asymmetric division during mouse oocyte maturation.
Yi K, Li R. Cytoskeleton (Hoboken). 2012;69:727-737.
Fluorescence fluctuation spectroscopy and imaging methods for examination of dynamic protein interactions in yeast.
Slaughter BD, Unruh JR, Li R. Methods Mol Biol. 2011;759:283-306.
Toward Quantitative "In Vivo Biochemistry" with Fluorescence Fluctuation Spectroscopy.
Slaughter BD, Li R. Mol Biol Cell. 2010;21:4306-4311.
Symmetry breaking in the life cycle of the budding yeast.
Slaughter BD, Smith SE, Li R. Cold Spring Harbor Perspect Biol. 2010;1:a003384.
