Publications
Publications
Supporting the scientific spirit of transparency, the Stowers Institute for Medical Research makes the data underlying its scientific publications freely accessible to the scientific community. Access to original, unprocessed data allows other scientists to validate and extend findings made by Stowers researchers.
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A polynomial-time algorithm computing lower and upper bounds of the rooted subtree prune and regraft distance.
Kannan L, Li H, Mushegian A. J Comput Biol. 2011;18:743-757.
Features of cryptic promoters and their varied reliance on bromodomain-containing factors.
Pattenden SG, Gogol MM, Workman JL. PLoS One. 2010;5:e12927.
Statistical analysis of nondisjunction assays in Drosophila.
Zeng Y, Li H, Schweppe NM, Hawley RS, Gilliland WD. Genetics. 2010;186:505-513.
A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches.
Kristensen DM, Kannan L, Coleman MK, Wolf YI, Sorokin A, Koonin EV, Mushegian A. Bioinformatics. 2010;26:1481-1487.
Actin disassembly 'clock' and membrane tension determine cell shape and turning: a mathematical model.
Mogilner A, Rubinstein B. J Phys Condensed Matter. 2010;22:194118.
Delayed correlation of mRNA and protein expression in rapamycin-treated cells and a role for Ggc1 in cellular sensitivity to rapamycin.
Fournier ML, Paulson A, Pavelka N, Mosley AL, Gaudenz K, Bradford WD, Glynn E, Li H, Sardiu ME, Fleharty B, Seidel C, Florens L, Washburn MP. Mol Cell Proteomics. 2010;9:271-284.
Expression profiling of S. pombe acetyltransferase mutants identifies redundant pathways of gene regulation.
Nugent RL, Johnsson A, Fleharty B, Gogol M, Xue-Franzen Y, Seidel C, Wright AP, Forsburg SL. BMC Genomics. 2010;11:59.
Comparative genomics of ethanolamine utilization.
Tsoy O, Ravcheev D, Mushegian A. J Bacteriol. 2009;191:7157-7164.
Cohesinopathy mutations disrupt the subnuclear organization of chromatin.
Gard S, Light W, Xiong B, Bose T, McNairn AJ, Harris B, Fleharty B, Seidel C, Brickner JH, Gerton JL. J Cell Biol. 2009;187:455-462.
Actin-myosin viscoelastic flow in the keratocyte lamellipod.
Rubinstein B, Fournier MF, Jacobson K, Verkhovsky AB, Mogilner A. Biophys J. 2009;97:1853-1863.
Global analysis of H3K4 methylation defines MLL family member targets and points to a role for MLL1-mediated H3K4 methylation in the regulation of transcriptional initiation by RNA polymerase II.
Wang P, Lin C, Smith ER, Guo H, Sanderson BW, Wu M, Gogol M, Alexander T, Seidel C, Wiedemann LM, Ge K, Krumlauf R, Shilatifard A. Mol Cell Biol. 2009;29:6074-6085.
Detection of biochemical pathways by probabilistic matching of phyletic vectors.
Li H, Kristensen DM, Coleman MK, Mushegian A. PLoS ONE. 2009;4:e5326.
The elasticity of motor-microtubule bundles and shape of the mitotic spindle
Rubinstein B, Larripa K, Sommi P, Mogilner A. Phys Biol. 2009;6:016005.
Expression for restricted partition function through Bernoulli polynomials
Rubinstein BY. The Ramanujan Journal. 2008;15:177-185.
The choice of optimal distance measure in genome-wide datasets
Glazko G, Gordon A, Mushegian A. Bioinformatics.2005;21:iii3-iii11.
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Identification and Localization of Cell Types in the Mouse Olfactory Bulb Using Slide-SeqV2
Fang A, Petentler K, Price A, Malloy S, Maddera C, Russell J, Treese M, Li H, Wang Y, McKinney S, Perera A, Yu CR. Methods Mol Biol. 2023;2710:171-183. Published Erratum Methods Mol Biol. 2023;2710:C1. doi: 10.1007/978-1-0716-3425-7_17.
Manipulation of Gene Activity in the Regenerative Model Sea Anemone, Nematostella vectensis
Hill EM, Chen CY, Del Viso F, Ellington LR, He S, Karabulut A, Paulson A, Gibson MC. Methods Mol Biol. 2022;2450:437-465.
Using fluorescent reporters in conjunction with cytometry and statistics to assess nuclear accumulation of ribosomal proteins
Kim DH, Box AC, Li H, Gerton JL. Methods Mol Biol.2017;1515:217-226.
Sec66-Dependent Regulation of Yeast Spindle-Pole Body Duplication Through Pom152.
Katta SS, Chen J, Gardner JM, Friederichs JM, Smith SE, Gogol M, Unruh JR, Slaughter BD, Jaspersen SL. Genetics. 2015;201:1479-1495
The Origin and Evolution of G Protein-Coupled Receptor Kinases.
Mushegian A, Gurevich VV, Gurevich EV. PLoS One. 2012;7:e33806.
Grand challenges in bioinformatics and computational biology.
Mushegian A. Front Genet. 2011;2:60.
Computational methods for Gene Orthology inference.
Kristensen DM, Wolf YI, Mushegian AR, Koonin EV. Brief Bioinform. 2011;12:379-391.
Thematic minireview series on computational systems biology.
Mushegian A, Conaway JW. J Biol Chem. 2011;286:23621-23622.
