Publications
Publications
Supporting the scientific spirit of transparency, the Stowers Institute for Medical Research makes the data underlying its scientific publications freely accessible to the scientific community. Access to original, unprocessed data allows other scientists to validate and extend findings made by Stowers researchers.
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A needed nomenclature for nucleosomes
Keogh MC, Almouzni G, Andrews AJ, Armache KJ, Arrowsmith CH, Baek SH, Bedford MT, Bernstein E, Cote J, David Y, Denu JM, Fierz B, Garcia BA, Glass KC, Gozani O, Helin K, Henikoff S, Jensen ON, Josefowicz SZ, Kelleher NL, Kutateladze TG, Lindner HH, Lu C, Luger K, Mallick P, Musselman CA, Muir TW, Pasa-Tolic L, Schneider R, Shi X, Shi Y, Sidoli S, Smith LM, Tyler JK, Wolberger C, Workman JL, Strahl BD, Young NL. Mol Cell. 2025;85:3554-3561.
C G composition in transposon-derived genes is increased in FXD with perturbed immune system
Suganuma T, Hassan H, Gogol M, Workman JL. NAR Mol Med. 2024;1:ugae015.
An Integrated Structural Model of the DNA Damage Responsive H3K4me3 Binding WDR76:SPIN1 Complex with the Nucleosome
Liu X, Zhang Y, Wen Z, Hao Y, Banks CAS, Cesare J, Bhattacharya S, Arvindekar S, Lange JJ, Xie Y, Garcia BA, Slaughter BD, Unruh JR, Viswanath S, Florens L, Workman JL, Washburn MP. Proc Natl Acad Sci U S A. 2024;121:e2318601121.
The Swi-Snf chromatin remodeling complex mediates gene repression through metabolic control
Church MC, Price A, Li H, Workman JL. Nucleic Acids Res. 2023;51:10278-10291.
Paraspeckles interact with SWI/SNF subunit ARID1B to regulate transcription and splicing
Reddy D, Bhattacharya S, Levy M, Zhang Y, Gogol M, Li H, Florens L, Workman JL. EMBO Rep 2023;24:e55345 doi: 10.15252/embr.202255345.
Elevated levels of the methyltransferase SETD2 causes transcription and alternative splicing changes resulting in oncogenic phenotypes
Bhattacharya S, Reddy D, Zhang N, Li H, Workman J. Front Cell Dev Biol. 2022;10:945668 doi: 10.3389/fcell.2022.945668.
MPTAC links alkylation damage signaling to sterol biosynthesis
Suganuma T, Workman JL. Redox Biol. 2022;51:102270. doi: 102210.101016/j.redox.102022.102270.
MOCS2 links nucleotide metabolism to nucleoli function
Suganuma T, Swanson SK, Gogol M, Garrett TJ, Florens L, Workman JL. J Mol Cell Biol. 2022;13:838-840.
The linker histone Hho1 modulates the activity of ATP-dependent chromatin remodeling complexes.
Amigo R, Farkas C, Gidi C, Hepp MI, Cartes N, Tarifeno E, Workman JL, Gutierrez JL. [published ahead of print December 25 2021]. Biochim Biophys Acta Gene Regul Mech. 2022;1865:194781.
The SAGA core module is critical during Drosophila oogenesis and is broadly recruited to promoters
Soffers JHM, Alcantara SG, Li X, Shao W, Seidel CW, Li H, Zeitlinger J, Abmayr SM, Workman JL. PLoS Genet. 2021;17:e1009668. doi: 10.1371/journal.pgen.1009668.
Structural basis of the interaction between SETD2 methyltransferase and hnRNP L paralogs for governing co-transcriptional splicing
Bhattacharya S, Wang S, Reddy D, Shen S, Zhang Y, Zhang N, Li H, Washburn MP, Florens L, Shi Y, Workman JL, Li F. Nat Commun. 2021;12:6452. doi: 6410.1038/s41467-41021-26799-41463.
The disordered regions of the methyltransferase SETD2 govern its function by regulating its proteolysis and phase separation
Bhattacharya S, Lange JJ, Levy M, Florens L, Washburn MP, Workman JL. J Biol Chem. 2021:101075.
The SESAME complex regulates cell senescence through the generation of acetyl-CoA
Chen W, Yu X, Wu Y, Tang J, Yu Q, Lv X, Zha Z, Hu B, Li X, Chen J, Ma L, Workman JL, Li S. Nat Metab. 2021;3:983-1000. doi: 10.1038/s42255-021-00412-9.
The methyltransferase SETD2 couples transcription and splicing by engaging mRNA processing factors through its SHI domain
Bhattacharya S, Levy MJ, Zhang N, Li H, Florens L, Washburn MP, Workman JL. Nat Commun. 2021;12:1443. doi: 1410.1038/s41467-41021-21663-w.
Metabolic regulation of telomere silencing by SESAME complex-catalyzed H3T11 phosphorylation
Zhang S, Yu X, Zhang Y, Xue X, Yu Q, Zha Z, Gogol M, Workman JL, Li S. Nat Commun. 2021;12:594. doi: 510.1038/s41467-41020-20711-41461.
Yeast Nuak1 phosphorylates histone H3 threonine 11 in low glucose stress by the cooperation of AMPK and CK2 signaling
Oh S, Lee J, Swanson SK, Florens L, Washburn MP, Workman JL. eLife. 2020;9:e64588. doi: 64510.67554/eLife.64588.
The plasticity of the pyruvate dehydrogenase complex confers a labile structure that is associated with its catalytic activity
Lee J, Oh S, Bhattacharya S, Zhang Y, Florens L, Washburn MP, Workman JL. PLos One. 2020;15:e0243489. doi: 10.1371/journal.pone.0243489.
Driving Integrative Structural Modeling with Serial Capture Affinity Purification
Liu X, Zhang Y, Wen Z, Hao Y, Banks CAS, Lange JJ, Slaughter BD, Unruh JR, Florens L, Abmayr SM, Workman JL, Washburn MP. Proc Natl Acad Sci U S A. 2020;117:31861-31870.
Regulation of SETD2 stability is important for the fidelity of H3K36me3 deposition
Bhattacharya S, Workman J. L. Epigentics Chromatin. 2020;13:40.
b-Catenin and Associated Proteins Regulate Lineage Differentiation in Ground State Mouse Embryonic Stem Cells
Tao F, Soffers J, Hu D, Chen S, Gao X, Zhang Y, Zhao C, Smith SE, Unruh JR, Zhang D, Tsuchiya D, Venkatraman A, Zhao M, Li Z, Qian P, Parmely T, He XC, Washburn M, Florens L, Perry JM, Zeitlinger J, Workman J, Li L. Stem Cell Rep. 2020;15:662-676.
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