Publications
Publications
Supporting the scientific spirit of transparency, the Stowers Institute for Medical Research makes the data underlying its scientific publications freely accessible to the scientific community. Access to original, unprocessed data allows other scientists to validate and extend findings made by Stowers researchers.
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CRISPR-RfxCas13d screening uncovers Bckdk as a post-translational regulator of maternal-to-zygotic transition in teleosts
Hernandez-Huertas L, Moreno-Sanchez I, Crespo-Cuadrado J, Vargas-Baco A, da Silva Pescador G, Zhang Y, Wen Z, Florens L, Santos-Pereira JM, Bazzini AA, Moreno-Mateos MA. EMBO J. 2025;44:7021-7059.
Enhanced RNA-targeting CRISPR-Cas technology in zebrafish
Moreno-Sanchez I, Hernandez-Huertas L, Nahon-Cano D, Martinez-Garcia PM, Treichel AJ, Gomez-Marin C, Tomas-Gallardo L, da Silva Pescador G, Kushawah G, Egidy R, Perera A, Diaz-Moscoso A, Cano-Ruiz A, Walker JA, 2nd, Munoz MJ, Holden K, Galceran J, Nieto MA, Bazzini AA, Moreno-Mateos MA. Nat Commun. 2025;16:2591.
Codon optimality influences homeostatic gene expression in zebrafish
DeVore ML, Bazzini AA. G3 (Bethesda). 2024 doi: 10.1093/g3journal/jkae247.
Protein profiling of zebrafish embryos unmasks regulatory layers during early embryogenesis
da Silva Pescador G, Baia Amaral D, Varberg JM, Zhang Y, Hao Y, Florens L, Bazzini AA. Cell Rep. 2024;43:114769.
Zika virus non-coding RNAs antagonize antiviral responses by PKR-mediated translational arrest
Pallares HM, Gonzalez Lopez Ledesma MM, Oviedo-Rouco S, Castellano LA, Costa Navarro GS, Fernandez-Alvarez AJ, D'Andreiz MJ, Aldas-Bulos VD, Alvarez DE, Bazzini AA, Gamarnik AV. Nucleic Acids Res. 2024;52:11128-11147.
Dengue virus preferentially uses human and mosquito non-optimal codons
Castellano LA, McNamara RJ, Pallares HM, Gamarnik AV, Alvarez DE, Bazzini AA. Mol Syst Biol. 2024;20:1085-1108.
miR-430 regulates zygotic mRNA during zebrafish embryogenesis
Baia Amaral D, Egidy R, Perera A, Bazzini AA. Genome Biol. 2024;25:74.
iCodon customizes gene expression based on the codon composition
Diez M, Medina-Munoz SG, Castellano LA, da Silva Pescador G, Wu Q, Bazzini AA. Sci Rep. 2022;12:12126 doi: 10.1038/s41598-022-15526-7.
Optimized CRISPR-RfxCas13d system for RNA targeting in zebrafish embryos
Hernandez-Huertas L, Kushawah G, Diaz-Moscoso A, Tomas-Gallardo L, Moreno-Sanchez I, da Silva Prescador G, Bazzini AA, Moreno-Mateos MA. STAR-Protocol. 2022;3:101058. doi: 10.1016/j.xpro.2021.101058..
Crosstalk between codon optimality and cis-regulatory elements dictates mRNA stability
Medina-Munoz SG, Kushawah G, Castellano LA, Diez M, DeVore ML, Salazar MJB, Bazzini AA. [published ahead of print January 7 2021]. Genome Biol. 2021;22:14. doi: 10.1186/s13059-020-02251-5.
CRISPR-Cas13d Induces Efficient mRNA Knockdown in Animal Embryos
Kushawah G, Hernandez-Huertas L, Abugattas-Nunez Del Prado J, Martinez-Morales JR, DeVore ML, Hassan H, Moreno-Sanchez I, Tomas-Gallardo L, Diaz-Moscoso A, Monges DE, Guelfo JR, Theune WC, Brannan EO, Wang W, Corbin TJ, Moran AM, Sanchez Alvarado A, Malaga-Trillo E, Takacs CM, Bazzini AA, Moreno-Mateos MA. Dev Cell. 2020;54:805-817 e807.
Translation of small downstream ORFs enhances translation of canonical main open reading frames
Wu Q, Wright M, Gogol MM, Bradford WD, Zhang N, Bazzini AA. EMBO J. 2020;39:e104763. doi: 104710../embj.2020104763.
Translation affects mRNA stability in a codon-dependent manner in human cells
Wu Q, Medina SG, Kushawah G, DeVore ML, Castellano LA, Hand JM, Wright M, Bazzini AA. eLife. 2019;8:e45396. doi: 45310.47554/eLife.45396.
