Publications
Publications
Supporting the scientific spirit of transparency, the Stowers Institute for Medical Research makes the data underlying its scientific publications freely accessible to the scientific community. Access to original, unprocessed data allows other scientists to validate and extend findings made by Stowers researchers.
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Niche Tet maintains germline stem cells independently of dioxygenase activity
Tu R, Ping Z, Liu J, Tsoi ML, Song X, Liu W, Xie T. EMBO J. 2024;43:1570-1590.
The prevalence of copy number increase at multiallelic copy number variants associated with cave colonization
Pokrovac I, Rohner N, Pezer Z. Mol Ecol. 2024;33:e17339.
Host evolution shapes cavefish gut microbiome
Riddle MR, Nguyen NK, Nave M, Peuss R, Maldonado E, Rohner N, Tabin CJ. Ecol Evol. 2024;14:e11192.
Graded FGF activity patterns distinct cell types within the apical sensory organ of the sea anemone Nematostella vectensis
Sabin KZ, Chen S, Hill EM, Weaver KJ, Yonke J, Kirkman M, Redwine WB, Klompen AML, Zhao X, Guo F, McKinney MC, Dewey JL, Gibson MC. Dev Biol. 2024;510:50-65.
Starvation resistant cavefish reveal conserved mechanisms of starvation-induced hepatic lipotoxicity
Pozo-Morales M, Cobham AE, Centola C, McKinney MC, Liu P, Perazzolo C, Lefort A, Libert F, Bai H, Rohner N, Singh SP. Life Sci Alliance 2024;7:e202302458 doi: 10.26508/lsa.202302458.
Compartmentalized ocular lymphatic system mediates eye-brain immunity
Yin X, Zhang S, Lee JH, Dong H, Mourgkos G, Terwilliger G, Kraus A, Geraldo LH, Poulet M, Fischer S, Zhou T, Mohammed FS, Zhou J, Wang Y, Malloy S, Rohner N, Sharma L, Salinas I, Eichmann A, Thomas JL, Saltzman WM, Huttner A, Zeiss C, Ring A, Iwasaki A, Song E. Nature. 2024.
The variation and evolution of complete human centromeres
Logsdon GA, Rozanski AN, Ryabov F, Potapova T, Shepelev VA, Catacchio CR, Porubsky D, Mao Y, Yoo D, Rautiainen M, Koren S, Nurk S, Lucas JK, Hoekzema K, Munson KM, Gerton JL, Phillippy AM, Ventura M, Alexandrov IA, Eichler EE.[published ahead of print April 2024]. Nature. 2024.
A transcriptomics-based RNAi screen for regulators of meiosis and early stages of oocyte development in Drosophila melanogaster
Hughes SE, Price A, Briggs S, Staber C, James M, Anderson M, Hawley RS. G3 (Bethesda). 2024 doi: 10.1093/g3journal/jkae028.
Quantifying Cell Proliferation Through Immunofluorescence on Whole-Mount and Cryosectioned Regenerating Caudal Fins in African Killifish
Granillo AO, Schnittker RR, Wang W, Sanchez Alvarado A. Bio Protoc. 2023;13:e4908.
Sea lamprey enlightens the origin of the coupling of retinoic acid signaling to vertebrate hindbrain segmentation
Bedois AMH, Parker HJ, Price AJ, Morrison JA, Bronner ME, Krumlauf R. Nat Commun. 2024;15:1538 doi: 10.1038/s41467-024-45911-x.
3D spheroid culturing of Astyanax mexicanus liver-derived cell lines recapitulates distinct transcriptomic and metabolic states of in vivo tissue environment.
Biswas T, Rajendran N, Hassan H, Li H, Zhao C, Rohner N. [published ahead for print January 9 2024]. J Exp Zool B Mol Dev Evol. 2024.
Topological structures and syntenic conservation in sea anemone genomes
Zimmermann B, Montenegro JD, Robb SMC, Fropf WJ, Weilguny L, He S, Chen S, Lovegrove-Walsh J, Hill EM, Chen CY, Ragkousi K, Praher D, Fredman D, Schultz D, Moran Y, Simakov O, Genikhovich G, Gibson MC, Technau U. Nat Commun. 2023;14:8270.
Proteome-Wide Identification of RNA-Dependent Proteins: An Emerging Role of RNAs in Plasmodium falciparum Protein Complexes
Hollin T, Abel S, Banks C, Hristov B, Prudhomme J, Hales K, Florens L, Stafford Noble W, Le Roch KG. Nat Commun. 2024;15:1365 doi: 10.1038/s41467-024-45519-1.
Distinct states of nucleolar stress induced by anti-cancer drugs
Potapova T, Unruh J, Conkright-Fincham J, Banks CAS, Florens L, Schneider DHG, Gerton JL. eLife. 2023.
Multiple reorganizations of the lateral elements of the synaptonemal complex facilitate homolog segregation in Bombyx mori oocytes
Xiang Y, Tsuchiya D, Yu Z, Zhao X, McKinney S, Unruh J, Slaughter B, Lake CM, Hawley RS. [published ahead of print January 5 2024. Curr Biol. 2024.
Defining a core configuration for human centromeres during mitosis
Sen Gupta A, Seidel C, Tsuchiya D, McKinney S, Yu Z, Smith SE, Unruh JR, Gerton JL. Nat Commun. 2023;14:7947 doi: 10.1038/s41467-023-42980-2.
Microglial Rac1 is essential for experience-dependent brain plasticity and cognitive performance
Socodato R, Almeida TO, Portugal CC, Santos ECS, Tedim-Moreira J, Galvao-Ferreira J, Canedo T, Baptista FI, Magalhaes A, Ambrosio AF, Brakebusch C, Rubinstein B, Moreira IS, Summavielle T, Pinto IM, Relvas JB. Cell Rep. 2023;42:113447 doi: 10.1016/j.celrep.2023.113447.
Environmental and molecular regulation of asexual reproduction in the cnidarian Nematostella vectensis
Al-Shaer L, Leach W, Baban N, Yagodich M, Gibson MC, Layden MJ. R Soc Open Sci. 2023;10:230152.
Ac/Ds transposition for CRISPR/dCas9-SID4x epigenome modulation in zebrafish
Chong-Morrison V, Mayes S, Simoes FC, Senanayake U, Carroll DS, Riley PR, Wilson SW, Sauka-Spengler T. Biol Open. 2023;12.
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A working model for the formation of Robertsonian chromosomes
Gerton JL. J Cell Sci. 2024;137:jcsw261912.
Activity‐dependent formation of the topographic map and the critical period in the development of mammalian olfactory system
Fang A, Yu CR. Genesis. 2024;62:e23586.
Pluripotency of a founding field: rebranding developmental biology
Rodgers CD, Memiya C, Arur S, Babonis L, Barres M, Bartlett M, Behringer RR, Benham-Pyle BW, Bergmann D, Blackman B, Brown CT, Browne B, Camacho J, Chabu CY, Chow I, Cleaver O, Cool J, Dennis MY, Dickenson AJ, Di Talia S, Frank M, Gillmor S, Haag ES, Hariharan IK, Harland R, Husbands A, Jerome-Majewska L, Koenig K, Labonne C, Layden MJ, Lowe C, Mani M, Martick M, McKown K, Moens C, Mosimann C, Onyenedum J, Reed R, Rivera A, rokhsar DS, Royer L, Rutaganiera F, Shahan R, Sinha N, Swalla BJ, Van Norman JM, Wagner DE, Wikramanayaka A, Zebell S, Brady SM. Development. 2024;151:dev202342 doi: 10.1242/dev.202342.
Unraveling Stress Resilience: Insights From Adaptations to Extreme Environments by Astyanax mexicanus Cavefish
Cobham AE, Rohner N. J Exp Zool B Mol Dev Evol. 2024.
Stress-protecting harbors for hematopoietic stem cells
Yang Z, Dong R, Mao X, He XC, Li L. [published ahead of print November 24 2023]. Curr Opin Cell Biol. 2023;86:102284.
Unveiling the Molecular Arsenal: Identification and Characterization of Sphaerulina musiva Effectors Targeting Populus Genotypes
Sankari S, Lovelace AH. Mol Plant Microbe Interact. 2023;36:752-753.
Rpd3S meets the nucleosome
Carrozza MJ, Workman JL. Cell Res. 2024;34:1-2.
Dynamic Changes in Ocular Shape During Human Development and its Implications for Retina Fovea Formation
Rasys AM, Wegerski A, Trainor P, Hufnagel RB, Menke DB, Lauderdale JD. BioEssays. 2023:e2300054.
Chromatin balances cell redox and energy homeostasis
Sugamuna T, Workman J. Epigenet Chromatin. 2023;16:46. https://doi.org/10.1186/s13072-13023-00520-13078.
A Generalist's Guide to Quantifying Swimming Behavior Within Traditional and Nontraditional Teleost Models
Olsen L, Alexander R, Krishnan J, Rohner N. In: W Wang, Y Wang, and N Rohner, eds. Emerging Model Organisms. New York, NY: Humana, New York, NY; 2023;194:263-272.
The SWI/SNF Complex in Neural Crest Cell Development and Disease
Fountain DM, Sauka-Spengler T. Annu Rev Genomics Hum Genet. 2023;24:203-223.
Second Special Issue on Methods for Omics Research: Proteome Research and Beyond
Florens L, Dong MQ, LaBaer J. J Proteome Res. 2023;22:1381-1384.
Unraveling the Molecular Arms Race: Grapevine Fanleaf Virus Proteins as Suppressors of Plant Antiviral Silencing Pathways
Sankari S, Lovelace AH. Mol Plant Microbe Interact. 2023;36:534-535.
Identification and Localization of Cell Types in the Mouse Olfactory Bulb Using Slide-SeqV2
Fang A, Petentler K, Price A, Malloy S, Maddera C, Russell J, Treese M, Li H, Wang Y, McKinney S, Perera A, Yu CR. Methods Mol Biol. 2023;2710:171-183. Published Erratum Methods Mol Biol. 2023;2710:C1. doi: 10.1007/978-1-0716-3425-7_17.
Serial block-face scanning electron microscopy of Schmidtea mediterranea.
McClain ML, Nowotarski SH. Methods Cell Biol. 2023;177:213-240.
The cavefish Astyanax mexicanus
Rohner N. Nat Methods. 2023;20:948-950.
(mis)‑Targeting of SWI/SNF complex(es) in cancer
Reddy D, Bhattacharya S, Workman JL. Cancer Metastasis Rev. 2023.
Emerging questions in transcriptional regulation : What are the sequence rules driving gene regulation?
Nora EP, Aerts S, Wittkopp PJ, Bussemaker HJ, Bulyk M, Sinha S, Zeitlinger J, Crocker J, Fuxman Bass JI. Cell Syst. 2023;14:247-251.
Establishment, long-term maintenance, and Characterization of Primary Liver Cells from Astyanax mexicanus
Rajendran N, Deng F, Wang Y, Kenzior O, Krishnan J, Biswas T, Parmely T, Rohner N, Zhao C. Curr Protoc. 2023;3:e736.
Personal autonomy and self-determination are crucial for professionalism in healthcare
Organ JM, Smith HF, Trainor PA, Allen K, Balta JY, Beresheim AC, Brewer-Deluce D, Brown KM, Burrows AM, Byers KT, Byram JN, Cale AS, Carroll MA, Champney T, Cornwall J, Dayal MR, DeLeon VB, Dunnwald M, Ferrigno C, Finn GM, Fox GM, Geller PL, Guttmann GD, Harper N, Harrell KM, Hartstone-Rose A, Hildebrandt S, Hortsch M, Jackson J, Johnson LE, Lohman Bonfiglio CM, McCumber TL, Menegaz RA, Mussell JC, O'Loughlin VD, Otobo TM, Oyedele O, Pascoe MA, Person D, Reidenberg JS, Robinson RE, Rogers KA, Ros MA, Ross CF, Sanders KA, Schmitt B, Schoenwolf GC, Smith TC, Smith TD, Sumner DR, Taylor AB, Taylor MJ, Teaford MF, Topp KS, Willmore KE, Wisco JJ, Yang J, Zumwalt AC. Anat Sci Educ. 2023;16:571-573.
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