Publications
Publications
Supporting the scientific spirit of transparency, the Stowers Institute for Medical Research makes the data underlying its scientific publications freely accessible to the scientific community. Access to original, unprocessed data allows other scientists to validate and extend findings made by Stowers researchers.
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A Borrelia burgdorferi LptD homolog is required for flipping of surface lipoproteins through the spirochetal outer membrane
He H, Pramanik AS, Swanson SK, Johnson DK, Florens L, Zuckert WR. [published ahead of print April 28 2023]. Mol Microbiol. 2023.
Recombination between heterologous human acrocentric chromosomes
Guarracino A, Buonaiuto S, de Lima LG, Potapova T, Rhie A, Koren S, Rubinstein B, Fischer C, Human Pangenome Reference C, Gerton JL, Phillippy AM, Colonna V, Garrison E. Nature. 2023;617:335-343.
c-Myc promotes polyploidy in murine trophoblast cells and suppresses senescence
Singh VP, Hassan H, Deng F, Tsuchiya D, McKinney S, Ferro K, Gerton JL. [published ahead of print May 9 2023]. Development. 2023.
B chromosomes reveal a female meiotic drive suppression system in Drosophila melanogaster
Hanlon SL, Hawley RS. [publsihed ahead for print May 5 2023]. Curr Biol 2023;33:1-7.
Selection-driven trait loss in independently evolved cavefish populations
Moran RL, Richards EJ, Ornelas-Garcia CP, Gross JB, Donny A, Wiese J, Keene AC, Kowalko JE, Rohner N, McGaugh SE. Nat Commun. 2023;14:2557 doi: 10.1038/s41467-023-37909-8.
POLR1A variants underlie phenotypic heterogeneity in craniofacial, neural, and cardiac anomalies
Smallwood K, Watt KEN, Ide S, Baltrunaite K, Brunswick C, Inskeep K, Capannari C, Adam MP, Begtrup A, Bertola DR, Demmer L, Demo E, Devinsky O, Gallagher ER, Guillen Sacoto MJ, Jech R, Keren B, Kussmann J, Ladda R, Lansdon LA, Lunke S, Mardy A, McWalters K, Person R, Raiti L, Saitoh N, Saunders CJ, Schnur R, Skorvanek M, Sell SL, Slavotinek A, Sullivan BR, Stark Z, Symonds JD, Wenger T, Weber S, Whalen S, White SM, Winkelmann J, Zech M, Zeidler S, Maeshima K, Stottmann RW, Trainor PA, Weaver KN. Am J Hum Genet. 2023;110:809-825.
Morphological changes and two Nodal paralogs drive left-right asymmetry in the squamate veiled chameleon (C. calyptratus).
Shylo NA, Smith SE, Price AJ, Guo F, McClain M, Trainor PA. Front Cell Dev Biol. 2023;11:1132166 doi: 10.3389/fcell.2023.1132166.
Shared retinoic acid responsive enhancers coordinately regulate nascent transcription ofHoxb coding and non-coding RNAs in the developing mouse neural tube
Afzal Z, Lange JJ, Nolte C, McKinney S, Wood C, Paulson A, De Kumar B, Unruh J, Slaughter BD, Krumlauf R. [published online ahead of print]. Development. 2023 doi: 10.1242/dev.201259.
Dynamic fibronectin assembly and remodeling by leader neural crest cells prevents jamming in collective cell migration.
Martinson WD, McLennan R, Teddy JM, McKinney MC, Davidson LA, Baker RE, Byrne HM, Kulesa PM, Maini PK. eLife. 2023;12 doi: 10.7554/eLife.83792.
An improved germline genome assembly for the sea lamprey Petromyzon marinus illuminates the evolution of germline-specific chromosomes.
Timoshevskaya N, Eskut KI, Timoshevskiy VA, Robb SMC, Holt C, Hess JE, Parker HJ, Baker CF, Miller AK, Saraceno C, Yandell M, Krumlauf R, Narum SR, Lampman RT, Gemmell NJ, Mountcastle J, Haase B, Balacco JR, Formenti G, Pelan S, Sims Y, Howe K, Fedrigo O, Jarvis ED, Smith JJ. Cell Rep. 2023;42:112263.
DAmFRET measures saturating concentrations and toxicities of protein phase transitions in vivo
Miller T, Wu J, Venkatesan S, Gama AR, Halfmann R. Mol Biol Cell. 2023:mbcE22110503.
A molecular cell biology toolkit for the study of meiosis in the silkworm Bombyx mori.
Xiang Y, Tsuchiya D, Guo F, Gardner J, McCroskey S, Price A, Tromer EC, Walters JR, Lake CM, Hawley RS. G3 (Bethesda). 2023:jkad058. doi: 010.1093/g1093journal/jkad1058. doi: 10.1093/g3journal/jkad058.
Cell-type profiling of the sympathetic nervous system using spatial transcriptomics and spatial mapping of mRNA..
Kasemeier-Kulesa JC, Morrison JA, McKinney S, Li H, Gogol M, Hall K, Chen S, Wang Y, Perera A, McLennan R, Kulesa PM. published ahead of print February 24 2023]. [Dev Dyn. 2023.
Off-target piRNA gene silencing in Drosophila melanogaster rescued by a transposable element insertion
Miller DE, Dorador AP, Van Vaerenberghe K, Li A, Grantham EK, Cerbin S, Cummings C, Barragan M, Egidy RR, Scott AR, Hall KE, Perera A, Gilliland WD, Hawley RS, Blumenstiel JP. PLoS Genet. 2023;19:e1010598 doi: 10.1371/journal.pgen.1010598.
Meiotic nuclear pore complex remodeling provides key insights into nuclear basket organization
King GA, Wettstein R, Varberg JM, Chetlapalli K, Walsh ME, Gillet LCJ, Hernandez-Armenta C, Beltrao P, Aebersold R, Jaspersen SL, Matos J, Unal E. J Cell Biol. 2023;222:e202204039. doi: 10.1083/jcb.202204039.
Colec12 and Trail signaling confine cranial neural crest cell trajectories and promote collective cell migration
McLennan R, Giniunaite R, Hildebrand K, Teddy JM, Kasemeier-Kulesa JC, Bolanos L, Baker RE, Maini PK, Kulesa PM. [published ahead of print January 25 2023]. Dev Dyn. 2023.
HyU: Hybrid Unmixing for longitudinal in vivo imaging of low signal to noise fluorescence
Chiang HJ, Koo DES, Kitano M, Burkitt S, Unruh JR, Zavaleta C, Trinh LA, Fraser SE, Cutrale F. Nat Methods. 2023;20:248-258.
Paraspeckles interact with SWI/SNF subunit ARID1B to regulate transcription and splicing
Reddy D, Bhattacharya S, Levy M, Zhang Y, Gogol M, Li H, Florens L, Workman JL. EMBO Rep 2023;24:e55345 doi: 10.15252/embr.202255345.
S. pombe wtf use dual transcriptional regulation and selective protein exclusion from spores to cause meiotic drive
Nuckolls NL, Nidamangala Srinivasa A, Mok AC, Helston RM, Bravo Nunez MA, Lange JJ, Gallagher TJ, Seidel CW, Zanders SE. PLos Genet. 2022:e1009847 doi: 10.1371/journal.pgen.1009847.
Deciphering the role of retinoic acid in hepatic patterning and induction in the mouse
Guertin TM, Palaria A, Mager J, Sandell LL, Trainor PA, Tremblay KD. Dev Biol. 2022;491:31-42.
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Establishment, long-term maintenance, and Characterization of Primary Liver Cells from Astyanax mexicanus
Rajendran N, Deng F, Wang Y, Kenzior O, Krishnan J, Biswas T, Parmely T, Rohner N, Zhao C. Curr Protoc. 2023;3:e736.
ISSCR Education Committee Syllabus and Learning Guide for Enhancing Stem Cell Literacy
Perlin JR, Anderson WJ, Bartfeld S, Couturier A, de Soysa Y, Hawley RS, Hu P, Loh YH, Mandal L, Master Z, Muotri AR, Piddini E, Polo JM, Mazzoni EO. Stem Cell Rep. 2023;18:417-419
Guide for collecting and reporting metadata on protocol variables and parameters from slide-based histotechnology assays to enhance reproducibility
Chiriboga L, Callis GM, Wang Y, Chlipala E. J Histotechnol. 2022:132-147.
YTHDF3 as a new player in hematopoietic stem cell regulation
Mao X, Li L. Haematologica. 2022;107:2290-2291.
Drug Resistance and Evolvability in an Emerging Human Fungal Pathogen
Billmyre RB. mBio. 2022:e0187622 doi: 10.1128/mbio.01876-22.
Heat Therapy Can Improve Hepatic Mitochondrial Function and Glucose Control
Johnson CN, Jensen RS, Von Schulze AT, Geiger PC. [published ahead of print April 9 2022]. Exerc Sport Sci Rev. 2022.
Manipulation of Gene Activity in the Regenerative Model Sea Anemone, Nematostella vectensis
Hill EM, Chen CY, Del Viso F, Ellington LR, He S, Karabulut A, Paulson A, Gibson MC. Methods Mol Biol. 2022;2450:437-465.
Cornelia de Lange syndrome and the Cohesin complex: Abstracts from the 9th Biennial Scientific and Educational Virtual Symposium 2020
Oliver C, Groves L, Hansen BD, Salehi M, Kheradmand S, Carrico CS, Caudill P, Mattingly M, Dorsett D, Chea S, Singh VP, Krantz ID, Huisman S, Deardorff MA, Kline AD. Abstracts from the 9th Biennial Scientific and Educational Virtual Symposium 2020. Am J Med Genet A. 2022;188A:1005-1014.
Superresolution Microscopy for Visualization of Physical Contacts Between Chromosomes at Nanoscale Resolution
Yu Z, Potapova TA. Methods Mol Biol. 2022;2458:359-375.
Live Imaging of the Dynamics of Mammalian Neural Crest Cell Migration
Moore EL, Trainor PA. Methods Mol Biol. 2022;2403:263-276.
Molecular Mechanisms and Evolutionary Consequences of Spore Killers in Ascomycetes
Zanders S, Johannesson H. Microbiol Mol Biol Rev. 2021;85:e0001621. doi: 0001610.0001128/MMBR.0000016-0001621.
Retinoic Acid signaling in vertebrate hindbrain segmentation:evolution and diversification
Bedois AMH, Parker HJ, Krumlauf R. Diversity. 2021;13:398.
Lipid metabolism in adaptation to extreme nutritional challenges
Olsen L, Thum E, Rohner N. Dev Cell. 2021;56:1417-1429.
Live Imaging of the Neural Crest Cell Epithelial-to-Mesenchymal Transition in the Chick Embryo
McKinney MC, Kulesa PM. Methods Mol Biol. 2021;2179:107-114.
Anatomy of the fungal microtubule organizing center, the spindle pole body
Jaspersen SL. Curr Opin Struct Biol. 2021;66:22-31.
In Situ Hematopoietic Stem Cell Imaging
Venkatraman A, Smith SE, Pinho S, Zhao M, Li L, Frenette P. Methods Mol Biol. 2021;2185:373-382.
Mechanics of a molecular mousetrap-- nucleation-limited innate immune signaling
Rodriguez Gama A, Miller T, Halfmann R. Biophys J. 2021;120:1150-1160..
Resistance to natural and synthetic gene drive systems
Price TAR, Windbichler N, Unckless RL, Sutter A, Runge JN, Ross PA, Pomiankowski A, Nuckolls NL, Montchamp-Moreau C, Mideo N, Martin OY, Manser A, Legros M, Larracuente AM, Holman L, Godwin J, Gemmell N, Courret C, Buchman A, Barrett LG, Lindholm AK. J Evol Biol. 2020;33:1345-1360.
To Bead or not to Bead? That is the question with cross-linking mass spectrometry.
Florens L, Hao Y, Zhang Y, Wen Z, Banks CAS, Washburn MP. J Biomol Tech : JBT. 2020;31:S24.
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