Publications
Publications
Supporting the scientific spirit of transparency, the Stowers Institute for Medical Research makes the data underlying its scientific publications freely accessible to the scientific community. Access to original, unprocessed data allows other scientists to validate and extend findings made by Stowers researchers.
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An anti-inflammatory activation sequence governs macrophage transcriptional dynamics during tissue injury in zebrafish
Denans N, Tran NTT, Swall ME, Diaz DC, Blanck J, Piotrowski T. Nat Commun. 2022;13:5356 doi: 10.1038/s41467-022-33015-3.
Single-cell transcriptome analysis reveals three sequential phases of gene expression during zebrafish sensory hair cell regeneration
Baek S, Tran NTT, Diaz DC, Tsai YY, Acedo JN, Lush ME, Piotrowski T. [published ahead of print 3-28-2022]. Dev Cell. 2022;57:1-21. doi: 10.1016/j.devcel.2022.1003.1001.
Tumor-initiating stem cell shapes its microenvironment into an immunosuppressive barrier and pro-tumorigenic niche
He X, Smith SE, Chen S, Li H, Wu D, Meneses-Giles PI, Wang Y, Hembree M, Yi K, Zhao X, Guo F, Unruh JR, Maddera LE, Yu Z, Scott A, Perera A, Wang Y, Zhao C, Bae K, Box A, Haug JS, Tao F, Hu D, Hansen DM, Qian P, Saha S, Dixon D, Anant S, Zhang D, Lin EH, Sun W, Wiedemann LM, Li L. Cell Rep. 2021;36:109674.doi: 10.1016/j.celrep.2021.109674.
Adaptive cell invasion maintains lateral line organ homeostasis in response to environmental changes.
Peloggia J, Munch D, Meneses-Giles P, Romero-Carvajal A, Lush ME, Lawson ND, McClain M, Pan YA, Piotrowski T. Dev Cell. 2021;56:1296-1312 e1297.
Evolutionary Origin and Nomenclature of Vertebrate Wnt11-Family Genes
Postlethwait JH, Navajas Acedo J, Piotrowski T. Zebrafish. 2019;16:469-476.
PCP and Wnt pathway components act in parallel during zebrafish mechanosensory hair cell orientation
Navajas Acedo J, Voas MG, Alexander R, Woolley T, Unruh JR, Li H, Moens C, Piotrowski T. Nat Commun. 2019;10:3993. doi: 3910.1038/s41467-41019-12005-y.
scRNA-Seq reveals distinct stem cell populations that drive hair cell regeneration after loss of Fgf and Notch signaling
Lush ME, Diaz DC, Koenecke N, Baek S, Boldt H, St Peter MK, Gaitan-Escudero T, Romero-Carvajal A, Busch-Nentwich EM, Perera AG, Hall KE, Peak A, Haug JS, Piotrowski T. Elife. 2019;8:e44431. doi: 44410.47554/eLife.44431.
Retinoic acid is required and Fgf, Wnt, and Bmp signaling inhibit posterior lateral line placode induction in zebrafish
Nikaido M, Acedo JN, Hatta K, Piotrowski T. Dev Biol. 2017;431:215-225.
In toto imaging of the migrating Zebrafish lateral line primordium at single cell resolution
Nogare DD, Nikaido M, Somers K, Head J, Piotrowski T, Chitnis AB. In toto imaging of the migrating Zebrafish lateral line primordium at single cell resolution. Dev Biol. 2017;422:14-23.
Proliferation-independent regulation of organ size by Fgf/Notch signaling
Kozlovskaja-Gumbriene A, Yi R, Alexander R, Aman A, Jiskra R, Nagelberg D, Knaut H, McClain M, Piotrowski T. Proliferation-independent regulation of organ size by Fgf/Notch signaling. eLife.2017;6: e21049. doi: 21010.27554/eLife.21049.
Drosophila poised enhancers are generated during tissue patterning with the help of repression
Koenecke N, Johnston J, He Q, Meier S, Zeitlinger J. Genome Res. 2017;27:64-74.
Localized Gene Induction By Infrared-Mediated Heat Shock
Venero Galanternik M, Nikaido M, Yu Z, McKinney SA, Piotrowski T. Zebrafish.2016;13:537-540.
Glypican4 modulates lateral line collective cell migration non cell-autonomously
Venero Galanternik M, Lush ME, Piotrowski T. Dev Biol.2016;419:321-336.
Genome-wide identification of Drosophila dorso-ventral enhancers by differential histone acetylation analysis
Koenecke N, Johnston J, Gaertner B, Natarajan M, Zeitlinger J. Genome Biol. 2016;17:196.
Imaging collective cell migration and hair cell regeneration in the sensory lateral line
Venero Galanternik M, Navajas Acedo J, Romero-Carvajal A, Piotrowski T. Methods Cell Biol.2016;134:211-256.
Regeneration of Sensory Hair Cells Requires Localized Interactions between the Notch and Wnt Pathways.
Romero-Carvajal A, Navajas Acedo J, Jiang L, Kozlovskaja-Gumbriene A, Alexander R, Li H, Piotrowski T. Dev Cell. 2015;34:267-282.
Single-Cell Based Quantitative Assay of Chromosome Transmission Fidelity.
Zhu J, Heinecke D, Mulla W, Bradford WD, Rubinstein B, Box A, Haug JS, Li R. G3 (Bethesda). 2015.;5:1043-56.
Acrofacial Dysostosis, Cincinnati Type, a Mandibulofacial Dysostosis Syndrome with Limb Anomalies, Is Caused by POLR1A Dysfunction.
Weaver KN, Watt KE, Hufnagel RB, Navajas Acedo J, Linscott LL, Sund KL, Bender PL, Konig R, Lourenco CM, Hehr U, Hopkin RJ, Lohmann DR, Trainor PA, Wieczorek D, Saal HM. Am J Hum Genet. 2015;96:765-774.
Heparan Sulfate Proteoglycans Regulate Fgf Signaling and Cell Polarity during Collective Cell Migration.
Venero Galanternik M, Kramer KL, Piotrowski T. Cell Rep. 2015;10:414-428.
Gene-expression analysis of hair cell regeneration in the zebrafish lateral line.
Jiang L, Romero-Carvajal A, Haug JS, Seidel CW, Piotrowski T. Proc Natl Acad Sci U S A. 2014;111:E1383-1392.
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Comparing Sensory Organs to Define the Path for Hair Cell Regeneration
Denans N, Baek S, Piotrowski T. Annu Rev Cell Dev Biol. 2019;35:568-589.
Insights into sensory hair cell regeneration from the zebrafish lateral line
Kniss JS, Jiang L, Piotrowski T. Curr Opin Genet Dev. 2016;40:32-40.
Sensory hair cell regeneration in the zebrafish lateral line.
Lush ME, Piotrowski T. Dev Dyn. 2014;243:1187-1202.
The development of lateral line placodes: Taking a broader view.
Piotrowski T, Baker CV. Dev Biol. 2014;389:68-81.
Lipid droplets as fat storage organelles in Caenorhabditis elegans.
Mak HY. In Thematic Review Series: Lipid Droplet Synthesis and Metabolism: from Yeast to Man. J Lipid Res. 2012;53:28-33.
