Publications
Publications
Supporting the scientific spirit of transparency, the Stowers Institute for Medical Research makes the data underlying its scientific publications freely accessible to the scientific community. Access to original, unprocessed data allows other scientists to validate and extend findings made by Stowers researchers.
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Quantifying Cell Proliferation Through Immunofluorescence on Whole-Mount and Cryosectioned Regenerating Caudal Fins in African Killifish
Granillo AO, Schnittker RR, Wang W, Sanchez Alvarado A. Bio Protoc. 2023;13:e4908.
Pluripotency retention and exogenous mRNA introduction in planarian stem cells in culture
Lei K, Zhang W, Chen J, McKinney SA, Ross EJ, Lee HC, Sánchez Alvarado A. iScience. 2023;26:106001.
Molecular characterization of a flatworm Girardia isolate from Guanajuato, Mexico
Duncan EM, Nowotarski SH, Guerrero-Hernandez C, Ross EJ, D'Orazio JA, Clubes de Ciencia Mexico Workshop for Developmental B. [published ahead of print June 17 2022]. Dev Biol 2022.
Island-specific evolution of a sex-primedautosome in a sexual planarian
Guo L, Bloom JS, Dols-Serrate D, Boocock J, Ben-David E, Schubert OT, Kozuma K, Ho K, Warda E, Chui C, Wei Y, Leighton D, Lemus Vergara T, Riutort M, Sánchez Alvarado A, Kruglyak L. [published ahead of print June 1 2022]. Nature. 2022;606:329-334.
Enhanced lipogenesis through Ppary helps cavefish adapt to food scarcity
Xiong S, Wang W, Kenzior A, Olsen L, Krishnan J, Persons J, Medley K, Peuss R, Wang Y, Chen S, Zhang N, Thomas N, Miles JM, Sánchez Alvarado A, Rohner N. [published ahead of print April 8 2022].Curr Biol. 2022.
Hox genes regulate asexual reproductive behavior and tissue segmentation in adult animals
Arnold CP, Lozano AM, Mann FG, Jr., Nowotarski SH, Haug JO, Lange JJ, Seidel CW, Sánchez Alvarado A. Nat Commun. 2021;12:6706. doi: 6710.1038/s41467-41021-26986-41462.
Planarian Ovary Dissection for Ultrastructural Analysis and Antibody Staining
Guo F, McClain M, Zhao X, Yi K, Parmely T, Unruh J, Slaughter B, Kruglyak L, Guo L, Sánchez Alvarado A. J Vis Exp. 2021:e62713. doi:62710.63791/62713.
Identification of rare, transient post-mitotic cell states that are induced by injury and required for whole-body regeneration in Schmidtea mediterranea
Benham-Pyle BW, Brewster CE, Kent AM, Mann FG, Jr., Chen S, Scott AR, Box AC, Sánchez Alvarado A. Nat Cell Biol. 2021;23:939-952.
Decellularization enables functional analysis of ECM remodeling in planarian regeneration
Sonpho E, Mann FG, Jr., Levy M, Ross EJ, Guerrero-Hernandez C, Florens L, Saraf A, Doddihal V, Ounjai P, Sánchez Alvarado A. Mol Cell Proteomics. 2021:100137. doi: 100110.101016/j.mcpro.102021.100137.
The Planarian Anatomy Ontology: A resource to connect data within and across experimental platforms
Nowotarski SH, Davies EL, Robb SMC, Ross EJ, Matentzoglu N, Doddihal V, Mir M, McClain M, Sánchez Alvarado A. Development. 2021;148:dev196097. doi: 196010.191242/dev.196097.
Image3C, a multimodal image-based and label independent integrative method for single-cell analysis
Accorsi A, Box AC, Peuss R, Wood C, Sanchez Alvarado A, Rohner N. eLife. 2021;10. doi: 10.7554/eLife.65372.
Canonical and early lineage-specific stem cell types identified in planarian SirNeoblasts
Niu K, Xu H, Xiong YZ, Zhao Y, Gao C, Seidel CW, Pan X, Ying Y, Lei K. Cell Regen. 2021;10:15.
Changes in regeneration-responsive enhancers shape regenerative capacities in vertebrates
Wang W, Hu CK, Zeng A, Alegre D, Hu D, Gotting K, Ortega Granillo A, Wang Y, Robb S, Schnittker R, Zhang S, Alegre D, Li H, Ross E, Zhang N, Brunet A, Sanchez Alvarado A. Science. 2020;369: eaaz3090. doi: 10.1126/science.aaz3090.
CRISPR-Cas13d Induces Efficient mRNA Knockdown in Animal Embryos
Kushawah G, Hernandez-Huertas L, Abugattas-Nunez Del Prado J, Martinez-Morales JR, DeVore ML, Hassan H, Moreno-Sanchez I, Tomas-Gallardo L, Diaz-Moscoso A, Monges DE, Guelfo JR, Theune WC, Brannan EO, Wang W, Corbin TJ, Moran AM, Sanchez Alvarado A, Malaga-Trillo E, Takacs CM, Bazzini AA, Moreno-Mateos MA. Dev Cell. 2020;54:805-817 e807.
Vertebrate diapause preserves organisms long term through Polycomb complex members
Hu CK, Wang W, Brind'Amour J, Singh PP, Reeves GA, Lorincz MC, Sánchez Alvarado A, Brunet A. Science. 2020;367:870-874.
Dramatically diverse Schizosaccharomyces pombe wtf meiotic drivers all display high gamete-killing efficiency
Bravo Nunez MA, Sabbarini IM, Eickbush MT, Liang Y, Lange JJ, Kent AM, Zanders SE. PLoS Genet. 2020;16:e1008350. doi: 1008310.1001371/journal.pgen.1008350.
Efficient depletion of ribosomal RNA for RNA sequencing in planarians.
Kim IV, Ross EJ, Dietrich S, Doring K, Sánchez Alvarado A, Kuhn CD. BMC Genomics. 2019;20:909. doi: 10.1186/s12864-019-6292-y.
Planarians recruit piRNAs for mRNA turnover in adult stem cells
Kim IV, Duncan EM, Ross EJ, Gorbovytska V, Nowotarski SH, Elliott SA, Sánchez Alvarado A, Kuhn CD. Genes Dev. 2019;33:1575-1590.
Wnt and TGF-β coordinate growth and patterning to regulate size-dependent behavior
Arnold CP, Benham-Pyle BW, Lange JJ, Wood CJ, Sánchez Alvarado A. Nature. 2019;572:655-659.
Comprehensive single-cell transcriptome lineages of a proto-vertebrate
Cao C, Lemaire LA, Wang W, Yoon PH, Choi YA, Parsons LR, Matese JC, Wang W, Levine M, Chen K. Nature. 2019;571:349-354.
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Serial block-face scanning electron microscopy of Schmidtea mediterranea.
McClain ML, Nowotarski SH. Methods Cell Biol. 2023;177:213-240.
Developmental biology is poised to discover altogether new principles in biology in the 21st century
Sánchez Alvarado A. Dev Biol. 2022;488:47-53.
Schmidtea happens:Re-establishing the planarian as a model for studying the mechanisms of regeneration
Newmark PA, Sánchez Alvarado A. Curr Top Dev Biol. 2022;147:307-344.
The Diverse Manifestations of Regeneration and Why We Need to Study Them
Sasidharan V, Sánchez Alvarado A. Cold Spring Harb Perspect Biol. 2021:a040931. doi: 040910.041101/cshperspect.a040931.
Unceasingly searching for answers - an interview with Claudio Stern
Sánchez-Alvarado A. Int J Dev Biol. 2021;65:131-136.
Regulation of Genomic Output and (Pluri)potency in Regeneration
Duncan EM, Sánchez Alvarado A. Annu Rev Genet. 2019;53:16.1–16.20.
Planarians and the History of Animal Regeneration: Paradigm Shifts and Key Concepts in Biology
Elliott SA, Sánchez Alvarado A. Methods Mol Biol.2018;1774:207-239.
Systemic RNA Interference in Planarians by Feeding of dsRNA Containing Bacteria.
Adler CE, Sánchez Alvarado A. Methods Mol Biol.2018;1774:445-454.
Planarian High Molecular Weight DNA Isolation by Spooling
Zhang S, Sánchez Alvarado A. Methods Mol Biol.2018;1774:277-284.
Whole-Mount BrdU Staining with Fluorescence In Situ Hybridization in Planarians
Cheng LC, Sánchez Alvarado A. Methods Mol Biol.2018;1774:423-434.
Culturing planarians in the laboratory
Merryman MS, Sánchez Alvarado A, Jenkin JC. Methods Mol Biol: Meiosis.2018;1774:241-258.
To solve old problems, study new research organisms.
Sánchez Alvarado A. Dev Biol.2018;433:111-114.
Types or States? Cellular Dynamics and Regenerative Potential.
Adler CE, Sanchez Alvarado A. Trends Cell Biol. 2015:25:687-96
SmedGD 2.0: The Schmidtea mediterranea genome database.
Robb SM, Gotting K, Ross E, Sanchez Alvarado A. Genesis. 2015;53:535-546.
Unravelling a can of worms.
Sanchez Alvarado A. eLife. 2015;4 e07431. doi: 07410.07554/eLife.07431.
Rethinking Differentiation: Stem Cells, Regeneration, and Plasticity.
Sanchez Alvarado A, Yamanaka S. Cell. 2014;157:110-119.
Learning about loss.
Sanchez Alvarado A. eLife. 2013;2:e00533. doi: 10.7554/eLife.00533.
On the trail of a tropical disease.
Sanchez Alvarado A. eLife. 2013;2:e01115. doi: 10.7554/eLife.01115.
The history and enduring contributions of planarians to the study of animal regeneration.
Elliott SA, Sanchez Alvarado A. Wiley Interdiscip Rev Dev Biol. 2013;2:301-326.
Q&A: What is regeneration, and why look to planarians for answers?
Alvarado SA. BMC Biology. 2012;10:88.
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