Publications
Publications
Supporting the scientific spirit of transparency, the Stowers Institute for Medical Research makes the data underlying its scientific publications freely accessible to the scientific community. Access to original, unprocessed data allows other scientists to validate and extend findings made by Stowers researchers.
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SYCP1 head-to-head assembly is required for chromosome synapsis in mouse meiosis
Billmyre KK, Kesler EA, Tsuchiya D, Corbin TJ, Weaver K, Moran A, Yu Z, Adams L, Delventhal K, Durnin M, Davies OR, Hawley RS. Sci Adv. 2023;9:eadi1562.
rRNA transcription is integral to phase separation and maintenance of nucleolar structure
Dash S, Lamb MC, Lange JJ, McKinney MC, Tsuchiya D, Guo F, Zhao X, Corbin TJ, Kirkman M, Delventhal K, Moore EL, McKinney S, Shiang R, Trainor PA. PLoS Genet. 2023;19:e1010854.
Dynamic regulation and requirement for ribosomal RNA transcription during mammalian development
Falcon KT, Watt KEN, Dash S, Zhao R, Sakai D, Moore EL, Fitriasari S, Childers M, Sardiu ME, Swanson S, Tsuchiya D, Unruh J, Bugarinovic G, Li L, Shiang R, Achilleos A, Dixon J, Dixon MJ, Trainor PA. Proc Natl Acad Sci U S A. 2022;119:e2116974119 doi: 10.1073/pnas.2116974119.
UBAP2/UBAP2L regulate UV-induced ubiquitylation of RNA polymerase II and are the human orthologues of yeast Def1
Herlihy AE, Boeing S, Weems JC, Walker J, Dirac-Svejstrup AB, Lehner MH, Conaway RC, Conaway JW, Svejstrup JQ. DNA Repair (Amst). 2022;115:103343. doi: 103310.101016/j.dnarep.102022.103343.
A High-throughput Automated ELISA Assay for Detection of IgG Antibodies to the SARS-CoV-2 Spike Protein
Conkright-Fincham J, Tomomori-Sato C, McGhee R, Leslie EM, Beucher CJ, Weems LE, Sato S, Redwine WB, Weaver KJ, Miller BD, Delventhal KM, Kary JJ, Koebbe AB, Dean A, Witt JL, Remy LM, Parmely TJ, Zhao C, Wang Y, Conaway JW, Unruh JR. Bio-protocol. 2022;12:e4301. doi: 4310.21769/BioProtoc.24301.
The SESAME complex regulates cell senescence through the generation of acetyl-CoA
Chen W, Yu X, Wu Y, Tang J, Yu Q, Lv X, Zha Z, Hu B, Li X, Chen J, Ma L, Workman JL, Li S. Nat Metab. 2021;3:983-1000. doi: 10.1038/s42255-021-00412-9.
NOTCH Signaling Controls Ciliary Body Morphogenesis and Secretion by Directly Regulating Nectin Protein Expression
Pang J, Le L, Zhou Y, Tu R, Hou Q, Tsuchiya D, Thomas N, Wang Y, Yu Z, Alexander R, Thexton M, Lewis B, Corbin T, Durnin M, Li H, Ashery-Padan R, Yan D, Xie T. Cell Rep. 2021;34:108603. doi: 108610.101016/j.celrep.102020.108603.
Differential complex formation via paralogs in the human Sin3 protein interaction network
Adams MK, Banks CAS, Thornton JL, Kempf CG, Zhang Y, Miah S, Hao Y, Sardiu ME, Killer M, Hattem GL, Murray A, Katt ML, Florens L, Washburn MP. Mol Cell Proteomics. 2020;19:1468-1484.
b-Catenin and Associated Proteins Regulate Lineage Differentiation in Ground State Mouse Embryonic Stem Cells
Tao F, Soffers J, Hu D, Chen S, Gao X, Zhang Y, Zhao C, Smith SE, Unruh JR, Zhang D, Tsuchiya D, Venkatraman A, Zhao M, Li Z, Qian P, Parmely T, He XC, Washburn M, Florens L, Perry JM, Zeitlinger J, Workman J, Li L. Stem Cell Rep. 2020;15:662-676.
CRISPR-Cas13d Induces Efficient mRNA Knockdown in Animal Embryos
Kushawah G, Hernandez-Huertas L, Abugattas-Nunez Del Prado J, Martinez-Morales JR, DeVore ML, Hassan H, Moreno-Sanchez I, Tomas-Gallardo L, Diaz-Moscoso A, Monges DE, Guelfo JR, Theune WC, Brannan EO, Wang W, Corbin TJ, Moran AM, Sanchez Alvarado A, Malaga-Trillo E, Takacs CM, Bazzini AA, Moreno-Mateos MA. Dev Cell. 2020;54:805-817 e807.
Overcoming Wnt-beta-catenin dependent anticancer therapy resistance in leukaemia stem cells
Perry JM, Tao F, Roy A, Lin T, He XC, Chen S, Lu X, Nemechek J, Ruan L, Yu X, Dukes D, Moran A, Pace J, Schroeder K, Zhao M, Venkatraman A, Qian P, Li Z, Hembree M, Paulson A, He Z, Xu D, Tran TH, Deshmukh P, Nguyen CT, Kasi RM, Ryan R, Broward M, Ding S, Guest E, August K, Gamis AS, Godwin A, Sittampalam GS, Weir SJ, Li L. Nat Cell Biol. 2020;22:689-700
Alkaline phosphatase-based chromogenic and fluorescence detection method for BaseScope™ In Situ hybridization
Wang Y, Xu W, Maddera L, Tsuchiya D, Thomas N, Yu CR, Parmely T. J Histotechnol. 2019;42:193-201.
N-Cadherin-Expressing Bone and Marrow Stromal Progenitor Cells Maintain Reserve Hematopoietic Stem Cells
Zhao M, Tao F, Venkatraman A, Li Z, Smith SE, Unruh J, Chen S, Ward C, Qian P, Perry JM, Marshall H, Wang J, He XC, Li L. Cell Rep. 2019;26:652-669 e656.
A Population of Navigator Neurons is Essential for Olfactory Map Formation during Critical Period
Wu Y, Ma L, Duyck K, Long C, Moran A, Scheerer H, Blanck J, Peak A, Box A, Perera A, Yu CR. Neuron. 2018;100. doi: 10.1016/j.neuron.2018.09.051.
Suppression of m(6)A reader Ythdf2 promotes hematopoietic stem cell expansion
Li Z, Qian P, Shao W, Shi H, He XC, Gogol M, Yu Z, Wang Y, Qi M, Zhu Y, Perry JM, Zhang K, Tao F, Zhou K, Hu D, Han Y, Zhao C, Alexander R, Xu H, Chen S, Peak A, Hall K, Peterson M, Perera A, Haug JS, Parmely T, Li H, Shen B, Zeitlinger J, He C, Li L. Cell Res. 2018. Author Correction: Cell Res 2018:1-14. doi.org/10.1038/s41422-018-0072-0. Published online July 2018.;28:904-917.
Combined expansion microscopy with structured illumination microscopy for analyzing protein complexes
Wang Y, Yu Z, Cahoon CK, Parmely T, Thomas N, Unruh JR, Slaughter BD, Hawley RS. Nat Protoc.2018;13:1869-1895.
Retinoid-Sensitive Epigenetic Regulation of the Hoxb Cluster Maintains Normal Hematopoiesis and Inhibits Leukemogenesis
Qian P, De Kumar B, He XC, Nolte C, Gogol M, Ahn Y, Chen S, Li Z, Xu H, Perry JM, Hu D, Tao F, Zhao M, Han Y, Hall K, Peak A, Paulson A, Zhao C, Venkatraman A, Box A, Perera A, Haug JS, Parmely T, Li H, Krumlauf R, Li L. Cell Stem Cell.2018;22:740-754 e747.
The Dlk1-Gtl2 Locus Preserves LT-HSC Function by Inhibiting the PI3K-mTOR Pathway to Restrict Mitochondrial Metabolism.
Qian P, He XC, Paulson A, Li Z, Tao F, Perry JM, Guo F, Zhao M, Zhi L, Venkatraman A, Haug JS, Parmely T, Li H, Dobrowsky RT, Ding WX, Kono T, Ferguson-Smith AC, Li L. Cell Stem Cell. 2016;18:214-228.
Captive Care, Raising, and Breeding of the Veiled Chameleon (Chamaeleo calyptratus).
Diaz RE, Jr., Anderson CV, Baumann DP, Kupronis R, Jewell D, Piraquive C, Kupronis J, Winter K, Greek TJ, Trainor PA. Cold Spring Harb Protoc. 2015;10:943-9
The Veiled Chameleon (Chamaeleo calyptratus Dumeril and Dumeril 1851): A Model for Studying Reptile Body Plan Development and Evolution.
Diaz RE, Jr., Anderson CV, Baumann DP, Kupronis R, Jewell D, Piraquive C, Kupronis J, Winter K, Bertocchini F, Trainor PA. Cold Spring Harb Protoc. 2015;10:889-94.
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Identification and Localization of Cell Types in the Mouse Olfactory Bulb Using Slide-SeqV2
Fang A, Petentler K, Price A, Malloy S, Maddera C, Russell J, Treese M, Li H, Wang Y, McKinney S, Perera A, Yu CR. Methods Mol Biol. 2023;2710:171-183. Published Erratum Methods Mol Biol. 2023;2710:C1. doi: 10.1007/978-1-0716-3425-7_17.
Progress toward the clinical application of patient-specific pluripotent stem cells.
Kiskinis E, Eggan K. J Clin Invest. 2010;120:51-59.
Heat Therapy Can Improve Hepatic Mitochondrial Function and Glucose Control
Johnson CN, Jensen RS, Von Schulze AT, Geiger PC. [published ahead of print April 9 2022]. Exerc Sport Sci Rev. 2022.
Unceasingly searching for answers - an interview with Claudio Stern
Sánchez-Alvarado A. Int J Dev Biol. 2021;65:131-136.
Husbandry Techniques for a Large Colony of Whiptail Lizards, Genus Aspidoscelis (Lacertilia: Teiidae)
Jewell D, Muensch A, Piraquive C, Winter K, Kupronis R, Baumann DP. SWCHR Bulletin. 2016;5:53-57.
Visualization of Lipid Droplets in C. elegans by Light and Electron Microscopy.
Mak HY. Methods Cell Biol. 2013;116C:39-51.
Suppression of cryptic intragenic transcripts is required for embryonic stem cell self-renewal.
Lin CH, Workman JL. EMBO J. 2011;30:1420-1421.
Signals and combinatorial functions of histone modifications.
Suganuma T, Workman JL. Annu Rev Biochem. 2011;80:473-499.
Readers of histone modifications.
Yun M, Wu J, Workman JL, Li B. Cell Res. 2011;21:564-578.
Gene expression and development. Special introduction.
Krumlauf R, Levine M. Dev Biol. 2010;339:224.
Signaling Gradients during Paraxial Mesoderm Development.
Aulehla A, Pourquie O. Cold Spring Harb Perspect Biol. 2010;2:a000869.
Rere controls retinoic acid signalling and somite bilateral symmetry.
Vilhais-Neto GC, Maruhashi M, Smith KT, Vasseur-Cognet M, Peterson AS, Workman JL, Pourquie O. Nature. 2010;463:953-957.
Genome modification in human embryonic stem cells.
Tenzen T, Zembowicz F, Cowan CA. J Cell Physiol. 2010;222:278-281.
Establishment of Hox vertebral identities in the embryonic spine precursors.
Iimura T, Denans N, Pourquie O. Curr Top Dev Biol. 2009/08/05 ed; 2009;88:201-234.
Hox Genes and Segmentation of the Hindbrain and Axial Skeleton
Alexander T, Nolte C, Krumlauf R. Annu Rev Cell Dev Biol. 2009;25:431-456.
New clues to actin function in chromatin regulation
Gottschalk AJ, Conaway RC, Conaway JW. Nat Struct Mol Biol.2008;15:432-433.
Novel roles for head mesoderm and somites in patterning the vertebrate neural tube
Trainor P, Bel-Vialar S, Itasaki N, Krumlauf R. In: EJ Sanders, JW Lash, and CP Ordahl, eds. The Origin and Fate of Somites. Amsterdam ; Washington, DC: IOS Press; 2001:30-47 xxi, 245 p.