Publications
Publications
Supporting the scientific spirit of transparency, the Stowers Institute for Medical Research makes the data underlying its scientific publications freely accessible to the scientific community. Access to original, unprocessed data allows other scientists to validate and extend findings made by Stowers researchers.
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A Complete Genome for the Common Marmoset
Hebbar P, Potapova T, Loucks H, Ray K, Rodrigues MF, Ryabov F, Malukiewicz J, Yoo D, Gomes de Lima L, Haber A, Kumar S, Banerjee S, Borchers M, Garcia GH, Gardner J, Hachem S, Heath HD, Ha SK, Mastoras M, McNulty B, Menendez J, Munson KM, Pal K, Park J, Plosch S, Roos C, Seligmann WE, Shepelev V, Spruce C, Violich I, Walter L, Makova KD, Thathiah A, Sukoff Rizzo SJ, Silva AC, Carter GW, Miga KH, Eichler EE, Conrad DF, Gerton JL, Alexandrov IA, Paten B. Cell 2026;189:4891-4908
Haplotype-resolved DiMeLo-seq maps centromeric chromatin in a complete diploid human genome
Xu Y, Loucks H, Menendez J, Ryabov F, Lucas JK, Cechova M, Morina L, Xu E, Dubocanin D, Chittenden C, Asri M, Violich I, Ortiz C, Gardner JMV, Hillaker T, O'Rourke S, McNulty B, Potapova TA, Mitchell MW, Schwartz JP, Straight AF, Gerton JL, Timp W, Alexandrov IA, Altemose N, Miga KH. Cell Genom. 2026:101324.
Vascular Patterning Shapes Intramembranous Ossification via the HIF1alpha-VEGF Axis
Dash S, Rettig JR, Gogol M, Trainor PA. J Dent Res. 2026:220345261463156.
Manipulation of protein translation and stem cell self-renewal by CRISPR activation of rRNA transcription
Wiesbeck M, Alard EL, Merino F, Chowdhury N, Egert L, Danese A, Imhof S, Iraci Borgia M, Rajan A, Fernandez-Novel Marx N, Kepesidis E, Koferle A, Cerron-Alvan LM, Vierl F, Truong TT, Thorwirth M, Bilalli L, Ninkovic J, Schieweck R, Diefenbacher M, Hauck SM, Trainor P, Mardakheh FK, Gotz M, Stricker SH. Science. 2026.
A gobal view of human centromere variation and evolution
Gao S, Oshima KK, Chuang SC, Loftus M, Potapova TA, Montanari A, Gordon DS, Yang Z, Human Genome Structural Variation C, Human Pangenome Reference C, Mao Y, Hsieh P, Gerton JL, Konkel MK, Ventura M, Logsdon GA. Nature 2026.
Positional interpretation of cis-regulatory code and nucleosome organization with deep learning models
McAnany CE, Weilert M, Mehta G, Kamulegeya F, Gardner JM, Schreiber J, Kundaje A, Zeitlinger J. Nat Commun. 2026. doi: 10.1038/s41467-026-74807-1.
The E-cadherin-Wnt-mir-994 Axis Repurposes a Cadherin Switch for Niche Robustness and Germline Stem Cell Maintenance
Tu R, Yau HL, Deng R, Webb SE, Chen S, Ni J, Xie T. Cell Prolif. 2026:e70245.
Syrah: a pipeline to maximize spatial transcriptomics data output
Brewster C, Mann FG, Jr., Benham-Pyle B, Sánchez Alvarado A. G3 (Bethesda). 2026;16:jkag107 doi: 10.1093/g3journal/jkag107.
Epiblast Lumenogenesis is not a mammalian-specific trait
Weberling A, Shylo NA, Wilson H, McClain M, Kupronis R, Muensch A, Williams SA, Hollfelder F, Trainor PA. Nat Commun. 2026. doi: 10.1038/s41467-026-73768-9.
isl1a Coordinates Onset and Termination of Regeneration of the Zebrafish Lateral Line
Meneses-Giles P, Brennan KJ, Tran NTT, Hintermann A, Lush ME, Piotrowski T. NPJ Regen Med. 2026.
RNase P/MRP subunits chaperone telomeraseholoenzyme assembly in fission yeast
Pan L, Patterson V, Mockel MM, Helston RM, Wellinger RJ, Zappulla DC, Baumann P. EMBO Rep. 2026.
The human parasite, Toxoplasma gondii, is paralyzed without two components of the apical polar ring
Munera Lopez J, Arias Padilla LF, Tengganu IF, Hao Y, Zhang Y, Florens L, Murray JM, Hu K. PLoS Pathogens 2026;22:e1014378.
Swi-Snf and Tup1-Cyc8 directly interact to antagonistically regulate gene transcription via long-range chromatin remodeling
Guo X, Alhussain MM, Lee B, Byrne N, Hokamp K, Aljaeed H, Alnajjar RH, Baazeem ZMF, Smethurst G, Kroger C, Banks CAS, Church MC, Workman JL, Kent NA, Fleming AB. Nat Commun. 2026 doi: 10.1038/s41467-026-74863-7.
Synergistic Role of Retinoid and Gata3 Signaling in Olfactory Epithelium Development
Matsushita A, Tsujimoto T, Xiuping N, Omi-Sugihara M, Xu L, Mithun S, Natsuyama S, Ohara H, Koga S, Inubushi T, Sandell LL, Trainor PA, Yamashiro T, Kurosaka H. Synergistic role of retinoid and Gata3 signaling in olfactory epithelium development. Congenit Anom (Kyoto). 2026;66:e70060.
Loss of FAM60A disrupts Sin3/HDAC control of the Hippo signaling and promotes oncogenic YAP1 activation
Miah M, Huda MN, Islam MR, Gerald D, Khator S, Saha A, Alam J, Thornton JL, Gies A, Bauer MA, Stephens KE, Nagalo BM, Rahman MA, Washburn MP, Miah S. Cell Death & Dis. 2026.
RegVelo: Gene-regulatory-informed dynamics of single cells
Wang W, Hu Z, Weiler P, Mayes S, Lange M, Fontain DM, Haug J, Wang J, Xue Z, Theis FJ. Cell. 2026;189:1-28.
Expanding the human proteome with microproteins and peptideins
Deutsch EW, Kok LW, Mudge JM, Valls CF, Jungreis I, Ruiz-Orera J, Sun Z, Kusebauch U, Fierro-Monti I, Abelin JG, Alba MM, Aspden JL, Bandyopadhyay S, Banerjee K, Baranov PV, Bazzini AA, Bourassa F, Bruford EA, Calviello L, Carr SA, Carvunis AR, Chothani S, Clauwaert J, Dean K, Faridi P, Frankish A, Goodale A, Green T, Hubner N, Ingolia NT, Kellis M, Magrane M, Martin MJ, Martinez TF, Menschaert G, Ohler U, Orchard S, Potter A, Rackham OJL, Rees MG, Root DE, Roth JA, Roucou X, Sialana FJ, Slavoff SA, Swirski MI, Tierney JAS, Trifiro FA, Valen E, Vasylieva V, Wacholder A, Wang S, Wang L, Weissman JS, Wu W, Xie Z, Choudhary JS, Bassani-Sternberg M, Vizcaino JA, Ternette N, Brunet MA, Moritz RL, Prensner JR, van Heesch S. Nature. 2026.
Generating vasculature and immune cell-chimeric tumoroids via intraperitoneal Xenograft
Gao W, Bakheet A, Li H, Zhang D, Fabec S, Esmaeili N, Gilbert S, Liu R, Ding X, Cai D, Zhang L, Li L, Han X. Cancer Lett. 2026;638:218136.
A J- domain protein enhances memory by promoting physiological amyloid formation in Drosophila
Patton K, Yi Y, Burt R, Ng KK, Mukhi M, Khaki PSS, Hervas R, Si K. Proc Natl Acad Sci U S A. 2026;123:e2516310123 doi: 10.1073/pnas.2516310123.
Cell death modalities modulate inflammatory and regenerative programs in zebrafish sensory organs
Munch D, Chen S, Ellis E, Denans N, Lush ME, Petentler K, Javier JE, Bae K, Piotrowski T. Nat Commun. 2026;17 doi: 10.1038/s41467-026-72517-2.
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