Genome-wide identification of Drosophila dorso-ventral enhancers by differential histone acetylation analysis
Koenecke N, Johnston J, Gaertner B, Natarajan M, Zeitlinger J. Genome Biol. 2016;17:196.
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Learn more<a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE68983" target="_blank" rel="noopener nofollow noreferrer">NCBI GEO | Accession ID: GSE68983</a><a href="http://research.stowers.org/zeitlingerlab/data/genome-wide.html" target="_blank" rel="noopener nofollow noreferrer">Linux Virtual Machine</a><a href=" http://younglab.wi.mit.edu/dorsal/Dorsal_network_targets.txt" target="_blank" rel="noopener nofollow noreferrer">Dataset Dl/Twi/Sna regions [19]</a><a href="http://data.modencode.org/publications/files/fly/DataS8.gff" target="_blank" rel="noopener nofollow noreferrer">Dataset S8 [71]</a>
Publication Notes
<div>Nina Koenecke and Jeffrey Johnston contributed equally to this work.The datasets supporting the conclusions of this article are available in the NCBI Gene Expression </div><div>Omnibus repository under accession number GSE68983. In addition, all data analysis performed here, </div><div>including raw data, processed data, software tools, and analysis scripts, has been reproduced in a </div><div>publicly accessible<a href="http://research.stowers.org/zeitlingerlab/data.html" target="_blank" rel="noopener nofollow noreferrer"> Linux virtual machine</a>. See the Zeitlinger Lab website's Data page at http://research.stowers.org/zeitlingerlab/data/genome-wide.html for details. The following publicly available datasets were analyzed in the current study: DI/Twi?Sna regions [19] obtained from <a href="http://younglab.wi.mit.edu/dorsal/Dorsal_network_targets.txt" target="_blank" rel="noopener nofollow noreferrer">http://younglab.wi.mit.edu/dorsal/Dorsal_network_targets.txt</a>, modENCODE</div><div>cold/warm/hot transcription factor binding regions Dataset S8 [71] obtained from </div><div><a href="http://data.modencode.org/publications/files/fly/DataS8.gff" target="_blank" rel="noopener nofollow noreferrer">http://data.modencode.org/publications/files/fly/DataS8.gff. </a></div>
