Publications

Original Research Papers
Cheng J, Park DE, Berrios C, White EA, Arora R, Yoon R, Branigan T, Xiao T, Westerling T, Federation A, Zeid R, Strober B, Swanson SK, Florens L, Bradner JE, Brown M, Howley PM, Padi M, Washburn MP, DeCaprio JA. PLoS Pathog. 2017;13:e1006668. doi: 1006610.1001371/journal.ppat.1006668.
Song Y, Liu C, Liu X, Trottier J, Beaudoin M, Zhang L, Pope C, Peng G, Barbier O, Zhong X, Li L, Wang L. Hepatology. 2017;66:1183-1196.
McLennan R, Bailey CM, Schumacher LJ, Teddy JM, Morrison JA, Kasemeier-Kulesa JC, Wolfe LA, Gogol MM, Baker RE, Maini PK, Kulesa PM. [published ahead of print August 15 2017].J Cell Biol. 2017.
Li C, Lan Y, Krumlauf R, Jiang R. J Dent Res. 2017;96:1273-1281.
Vilhais-Neto GC, Fournier M, Plassat JL, Sardiu ME, Saraf A, Garnier JM, Maruhashi M, Florens L, Washburn MP, Pourquie O. Nat Commun. 2017;8:728. doi: 710.1038/s41467-41017-00593-41466.
Kousa YA, Roushangar R, Patel N, Walter A, Marangoni P, Krumlauf R, Klein OD, Schutte BC. J Dent Res. 2017;96:1306-1313.
De Kumar B, Parker HJ, Paulson A, Parrish ME, Pushel I, Singh NP, Zhang Y, Slaughter BD, Unruh JR, Florens L, Zeitlinger J, Krumlauf R. Genome Res. 2017;27:1501-1512.
Pascual J, Jacobs J, Sansores-Garcia L, Natarajan M, Zeitlinger J, Aerts S, Halder G, Hamaratoglu F. Dev Cell. 2017;42:667-680.e4.
Dhatchinamoorthy K, Shivaraju M, Lange JJ, Rubinstein B, Unruh JR, Slaughter BD, Gerton JL. J Cell Biol. 2017.
Sasidharan V, Marepally S, Elliott SA, Baid S, Lakshmanan V, Nayyar N, Bansal D, Sanchez Alvarado A, Vemula PK, Palakodeti D. Development. 2017;144:3211-3223
McDonald NA, Lind AL, Smith SE, Li R, Gould K.  eLife. 2017;6:e28865. doi: 28810.27554/eLife.28865.
Salim D, Bradford WD, Freeland A, Cady G, Wang J, Pruitt SC, Gerton JL.  PLoS Genet. 2017;13:e1007006.doi: 10.1371/journal.pgen.1007006.
Iulianella A, Sakai D, Kurosaka H, Trainor P.  Dev Dyn. 2017.
Li X, Seidel CW, Szerszen LT, Lange JJ, Workman JL, Abmayr SM. Genes Dev. 2017;31:1588-1600.
Mulla WA, Seidel CW, Zhu J, Tsai HJ, Smith SE, Singh P, Bradford WD, McCroskey S, Nelliat AR, Conkright J, Peak A, Malanowski KE, Perera AG, Li R. eLife. 2017;6:e27991. doi: 27910.27554/eLife.27991.
Cahoon CK, Yu Z, Wang Y, Guo F, Unruh JR, Slaughter BD, Hawley RS. Proc Natl Acad Sci U S A. 2017;114:E6857-E6866.
Bestul AJ, Yu Z, Unruh JR, Jaspersen SL. J Cell Biol. 2017;216:2409-2424.
Redwine WB, DeSantis ME, Hollyer I, Htet ZM, Tran PT, Swanson SK, Florens L, Washburn MP, Reck-Peterson SL. eLife. 2017;6:e28257. doi: 28210.27554/eLife.28257.
Ahn Y, Sims C, Murray MJ, Kuhlmann PK, Fuentes-Antras J, Weatherbee SD, Krumlauf R. Development. 2017;144:2824-2836.
Yan KS, Gevaert O, Zheng GXY, Anchang B, Probert CS, Larkin KA, Davies PS, Cheng ZF, Kaddis JS, Han A, Roelf K, Calderon RI, Cynn E, Hu X, Mandleywala K, Wilhelmy J, Grimes SM, Corney DC, Boutet SC, Terry JM, Belgrader P, Ziraldo SB, Mikkelsen TS, Wang F, von Furstenberg RJ, Smith NR, Chandrakesan P, May R, Chrissy MAS, Jain R, Cartwright CA, Niland JC, Hong YK, Carrington J, Breault DT, Epstein J, Houchen CW, Lynch JP, Martin MG, Plevritis SK, Curtis C, Ji HP, Li L, Henning SJ, Wong MH, Kuo CJ. Intestinal Enteroendocrine Lineage Cells Possess Homeostatic and Injury-Inducible Stem Cell Activity. Cell Stem Cell. 2017;21:78-90 e76.
Dyer JO, Dutta A, Gogol M, Weake VM, Dialynas G, Wu X, Seidel C, Zhang Y, Florens L, Washburn MP, Abmayr SM, Workman JL. J Mol Biol. 2017;429:2093-2107.
Xu B, Li H, Perry JM, Singh VP, Unruh J, Yu Z, Zakari M, McDowell W, Li L, Gerton JL. PLoS Genet. 2017;13:e1006771. doi: 10.1371/journal.pgen.1006771
Kuchay S, Giorgi C, Simoneschi D, Pagan J, Missiroli S, Saraf A, Florens L, Washburn MP, Collazo-Lorduy A, Castillo-Martin M, Cordon-Cardo C, Sebti SM, Pinton P, Pagano M. Nature. 2017;546:554-561.
Nuckolls NL, Bravo Nunez MA, Eickbush MT, Young JM, Lange JJ, Yu JS, Smith GR, Jaspersen SL, Malik HS, Zanders SE. eLife. 2017;6:e26033. doi: 26010.27554/eLife.26033.
De Kumar B, Parker HJ, Parrish ME, Lange JJ, Slaughter BD, Unruh JR, Paulson A, Krumlauf R. Proc Natl Acad Sci U S A. 2017;114:5838-5845.
Gill J, Park Y, McGinnis JP, Perez-Sanchez C, Blanchette M, Si K. Cell. 2017;169:836-848.e815.
Prochazkova M, Hakkinen TJ, Prochazka J, Spoutil F, Jheon AH, Ahn Y, Krumlauf R, Jernvall J, Klein OD. Development. 2017;144:2212-2221.
Nemec CM, Yang F, Gilmore JM, Hintermair C, Ho YH, Tseng SC, Heidemann M, Zhang Y, Florens L, Gasch AP, Eick D, Washburn MP, Varani G, Ansari AZ. Proc Natl Acad Sci U S A. 2017;114:E3944-E39.
Shao W, Zeitlinger J. [published ahead of print May 15 2017] Nat Genet. 2017.
Ragkousi K, Marr K, McKinney S, Ellington L, Gibson MC. Curr Biol. 2017;27:1381-1386.
Wu D, Zhao L, Feng Z, Yu C, Ding J, Wang L, Wang F, Liu D, Zhu H, Xing F, Conaway JW, Conaway RC, Cai Y, Jin J. J Biol Chem. 2017;292:10014-10025.
Ma X, Zhu X, Han Y, Story B, Do T, Song X, Wang S, Zhang Y, Blanchette M, Gogol M, Hall K, Peak A, Anoja P, Xie T. Dev Cell. 2017;41:157-169.e5.
Weems JC, Slaughter BD, Unruh JR, Boeing S, Hall SM, McLaird MB, Yasukawa T, Aso T, Svejstrup JQ, Conaway JW, Conaway RC. Cockayne syndrome B protein regulates recruitment of the Elongin A ubiquitin ligase to sites of DNA damage. J Biol Chem. 2017;292:6431-6437.
Park JW, Yan L, Stoddard C, Wang X, Yue Z, Crandall L, Robinson T, Chang Y, Denton K, Li E, Jiang B, Zhang Z, Martins-Taylor K, Yee SP, Nie H, Gu F, Si W, Xie T, Yue L, Xu RH. Recapitulating and Correcting Marfan Syndrome in a Cellular Model. Int J Biol Sci. 2017;13:588-603.
Donato V, Bonora M, Simoneschi D, Sartini D, Kudo Y, Saraf A, Florens L, Washburn MP, Stadtfeld M, Pinton P, Pagano M. Nat Cell Biol. 2017;19:341-351.
Sardiu ME, Gilmore JM, Groppe B, Florens L, Washburn MP. Identification of Topological Network Modules in Perturbed Protein Interaction Networks. Sci Rep. 2017;7:43845. doi: 10.1038/srep43845.
Accorsi A, Ross E, Tu KC, Williams M, Robb SM, Elliott SA, Sanchez Alvarado A. Am Biol Teacher. 2016;79:208-223.
Ruan L, Zhou C, Jin E, Kucharavy A, Zhang Y, Wen Z, Florens L, Li R. Nature. 2017;543:443-446.
Tsai KL, Yu X, Gopalan S, Chao TC, Zhang Y, Florens L, Washburn MP, Murakami K, Conaway RC, Conaway JW, Asturias FJ. Nature. 2017;544:196-201.
Dutta A, Sardiu M, Gogol M, Gilmore J, Zhang D, Florens L, Abmayr SM, Washburn MP, Workman JL. Cell Rep. 2017;18:2124-2134.​
Jin ZB, Wu J, Huang XF, Feng CY, Cai XB, Mao JY, Xiang L, Wu KC, Xiao X, Kloss BA, Li Z, Liu Z, Huang S, Shen M, Cheng FF, Cheng XW, Zheng ZL, Chen X, Zhuang W, Zhang Q, Young TL, Xie T, Lu F, Qu J. Proc Natl Acad Sci U S A. 2017;114:4219-4224.
Lee J, Shik Choi E, David Seo H, Kang K, Gilmore JM, Florens L, Washburn MP, Choe J, Workman JL, Lee D. Nat Commun. 2017;8:14527. doi: 14510.11038/ncomms14527.
Kurosaka H, Wang Q, Sandell L, Yamashiro T, Trainor PA. Rdh10 loss-of-function and perturbed retinoid signaling underlies the etiology of choanal atresia. Hum Mol Genet. 2017;26:1268-1279.
Hu D, Gao X, Cao K, Morgan MA, Mas G, Smith ER, Volk AG, Bartom ET, Crispino JD, Di Croce L, Shilatifard A. Mol Cell. 2017;65:460-475 e466.
Accorsi A, Benatti S, Ross E, Nasi M, Malagoli D. Dev Comp Immunol. 2017;72:37-43.
Dowdell AS, Murphy MD, Azodi C, Swanson SK, Florens L, Chen S, Zuckert WR.  J Bacteriol. 2017;199:e00658-00616. doi: 00610.01128/JB.00658-00616.
Nogare DD, Nikaido M, Somers K, Head J, Piotrowski T, Chitnis AB. In toto imaging of the migrating Zebrafish lateral line primordium at single cell resolution. Dev Biol. 2017;422:14-23.
Kozlovskaja-Gumbriene A, Yi R, Alexander R, Aman A, Jiskra R, Nagelberg D, Knaut H, McClain M, Piotrowski T. Proliferation-independent regulation of organ size by Fgf/Notch signaling. eLife. 2017;6: e21049. doi: 21010.27554/eLife.21049.
Liang K, Volk AG, Haug JS, Marshall SA, Woodfin AR, Bartom ET, Gilmore JM, Florens L, Washburn MP, Sullivan KD, Espinosa JM, Cannova J, Zhang J, Smith ER, Crispino JD, Shilatifard A. Cell. 2017;168:59-72.e13.
Amin MB, Miura N, Uddin MK, Islam MJ, Yoshida N, Iseki S, Kume T, Trainor PA, Saitsu H, Aoto K. Congenit Anom (Kyoto). 2017;57:24-31.
Embryonic origin of adult stem cells required for tissue homeostasis and regeneration
Davies EL, Lei K, Seidel CW, Kroesen AE, McKinney SA, Guo L, Robb SM, Ross EJ, Gotting K, Sanchez Alvarado A. eLife. 2017;6:e21052. doi: 21010.27554/eLife.21052.
Hepp MI, Smolle M, Gidi C, Amigo R, Valenzuela N, Arriagada A, Maureira A, Gogol MM, Torrejon M, Workman JL, Gutierrez JL. Biochim Biophys Acta. 2017;1860:316-326..
Koenecke N, Johnston J, He Q, Meier S, Zeitlinger J. Genome Res. 2017;27:64-74.
Reviews, Commentaries, Chapters or Books
Eubanks CG, Dayebgadoh G, Liu X, Washburn MP. Expert Rev Proteomics. 2017;14:905-915.
Yousefi M, Li L, Lengner CJ. Hierarchy and Plasticity in the Intestinal Stem Cell Compartment. Trends Cell Biol. 2017;27:753-764.
Parker HJ, Krumlauf R. [published ahead of print August 3 2017]. Wiley Interdiscip Rev Dev Biol. 2017.
Russell JJ, Theriot JA, Sood P, Marshall WF, Landweber LF, Fritz-Laylin L, Polka JK, Oliferenko S, Gerbich T, Gladfelter A, Umen J, Bezanilla M, Lancaster MA, He S, Gibson MC, Goldstein B, Tanaka EM, Hu CK, Brunet A. BMC biology. 2017;15:55.
Hughes SE, Hawley RS. Methods Mol Biol. 2017;1471:255-264.
Krishnan J, Rohner N. [published ahead of print January 10 2017]. Philos Trans R Soc Lond B Biol Sci. 2017;372.
Dutta A, Workman JL. Methods Mol Biol. 2017;1528:1-17.
Miller DE, Hawley RS. Curr Biol. 2017;27:R26-R28.
Yu CR, Wu Y. Exp Neurol. 2017;287:395-408.