Publications

Original Research Papers
Arnold CP, Lozano AM, Mann FG, Jr., Nowotarski SH, Haug JO, Lange JJ, Seidel CW, Sánchez Alvarado A. Nat Commun. 2021;12:6706. doi: 6710.1038/s41467-41021-26986-41462.
Zimmermann RC, Sardiu ME, Manton CA, Miah MS, Banks CAS, Adams MK, Koestler DC, Hurst DR, Edmonds MD, Washburn MP, Welch DR. Plos One. 2021;16:e0259128. doi: 10.1371/journal.pone.0259128.
Bhattacharya S, Wang S, Reddy D, Shen S, Zhang Y, Zhang N, Li H, Washburn MP, Florens L, Shi Y, Workman JL, Li F. Nat Commun. 2021;12:6452. doi: 6410.1038/s41467-41021-26799-41463.
Maintaining mouse eyeball morphology on glass slides to study subtle structural and gene expression changes using single molecular in situ hybridization and immunofluorescence multiplexing
Pang J, Thomas N, Tsuchiya D, Parmely T, Yan D, Xie T, Wang Y. [published ahead of print November 20 2021]. STAR Protoc. 2021.
Suganuma T, Swanson SK, Gogol M, Garrett TJ, Florens L, Workman JL. [published ahead of print October 26 2021]. J Mol Cell Biol. 2021-09-14.
A distinct inner nuclear membrane proteome in Saccharomyces cerevisiae gametes
Shelton SN, Smith SE, Unruh JR, Jaspersen SL. G3: Genes, Genomes, Genetics. 2021:jkab345. doi: 310.1093/g1093journal/jkab1345.
He Y, Sato S, Tomomori-Sato C, Chen S, Goode ZH, Conaway JW, Conaway RC. Proc Natl Acad Sci U S A. 2021;118:e2108751118. doi: 10.1073/pnas.2108751118.
Guo F, McClain M, Zhao X, Yi K, Parmely T, Unruh J, Slaughter B, Kruglyak L, Guo L, Sánchez Alvarado A. J Vis Exp. 2021:e62713. doi:62710.63791/62713.
Gardner JM, O'Toole E, Jaspersen SL. MicroPubl Biol. 2021;2021.  doi: 10.17912/micropub.biology.000463. eCollection 2021.
Ooi SK, Sato S, Tomomori-Sato C, Zhang Y, Wen Z, Banks CAS, Washburn MP, Unruh JR, Florens L, Conaway RC, Conaway JW.  Proc Natl Acad Sci U S A. 2021;118:e2107277118. doi: 2107277110.2107271073/pnas.2107277118.
He X, Smith SE, Chen S, Li H, Wu D, Meneses-Giles PI, Wang Y, Hembree M, Yi K, Zhao X, Guo F, Unruh JR, Maddera LE, Yu Z, Scott A, Perera A, Wang Y, Zhao C, Bae K, Box A, Haug JS, Tao F, Hu D, Hansen DM, Qian P, Saha S, Dixon D, Anant S, Zhang D, Lin EH, Sun W, Wiedemann LM, Li L. Cell Rep. 2021;36:109674.doi: 10.1016/j.celrep.2021.109674.
Benham-Pyle BW, Brewster CE, Kent AM, Mann FG, Jr., Chen S, Scott AR, Box AC, Sánchez Alvarado A. Nat Cell Biol. 2021;23:939-952.
Sonpho E, Mann FG, Jr., Levy M, Ross EJ, Guerrero-Hernandez C, Florens L, Saraf A, Doddihal V, Ounjai P, Sánchez Alvarado A. Mol Cell Proteomics. 2021:100137.
Kasemeier-Kulesa JC, Spengler JA, Muolo CE, Morrison JA, Woolley TE, Schnell S, Kulesa PM. Dev Biol. 2021;480:78-90.
Domnauer M, Zheng F, Li L, Zhang Y, Chang CE, Unruh JR, Conkright-Fincham J, McCroskey S, Florens L, Zhang Y, Seidel C, Fong B, Schilling B, Sharma R, Ramanathan A, Si K, Zhou C. Mol Cell. 2021;81:3294-3309 e3212.
Bhattacharya S, Lange JJ, Levy M, Florens L, Washburn MP, Workman JL. J Biol Chem. 2021:101075.
Nowotarski SH, Davies EL, Robb SMC, Ross EJ, Matentzoglu N, Doddihal V, Mir M, McClain M, Sánchez Alvarado A. Development. 2021;148:dev196097. doi: 196010.191242/dev.196097.
Biphasic co-flow through a sudden expansion or contaction of Hele-Shaw channel
Rubinstien BY, Zusmanovich D, Li Z, Leshansky AM. Phys Rev Fluids. 2021;6:074201. doi: 10.1103/PhysRevFluids.6.074201.
Wang Q, Xu L, Miura J, Saha MK, Uemura Y, Sandell LL, Trainor PA, Yamashiro T, Kurosaka H. Front Cell Dev Biol. 2021;9:596838. doi: 596810.593389/fcell.592021.596838.
O'Gorman M, Thakur S, Imrie G, Moran RL, Choy S, Sifuentes-Romero I, Bilandzija H, Renner KJ, Duboue E, Rohner N, McGaugh SE, Keene AC, Kowalko JE. [published ahead of print July 23 2021]. Curr Biol. 2021.
Accorsi A, Box AC, Peuss R, Wood C, Sanchez Alvarado A, Rohner N. eLife. 2021;10. doi: 10.7554/eLife.65372.
Cytidine Acetylation Yields A Noninflammatory Synthetic Messenger RNA
Nance KD, Gamage ST, Alam MM, Yang A, Levy MJ, Link CN, Florens L, Washburn MP, Gu S, Oppenheim JJ, Meier JL. Cell Chem Biol. 2021;28:1-9.
Kim BY, Wang JR, Miller DE, Barmina O, Delaney E, Thompson A, Comeault AA, Peede D, D'Agostino ER, Pelaez J, Aguilar JM, Haji D, Matsunaga T, Armstrong EE, Zych M, Ogawa Y, Stamenkovic-Radak M, Jelic M, Veselinovic MS, Tanaskovic M, Eric P, Gao JJ, Katoh TK, Toda MJ, Watabe H, Watada M, Davis JS, Moyle LC, Manoli G, Bertolini E, Kostal V, Hawley RS, Takahashi A, Jones CD, Price DK, Whiteman N, Kopp A, Matute DR, Petrov DA. eLife. 2021;10:e66405. doi: 66410.67554/eLife.66405.
Kurosaka H, Mushiake J, Mithun S, Wu Y, Wang Q, Kikuchi M, Nakaya A, Yamamoto S, Inubushi T, Koga S, Sandell LL, Trainor P, Yamashiro T. [published ahead of print July 18 2021]. Hum Mol Genet. 2021.
Mack KL, Jaggard JB, Persons JL, Roback EY, Passow CN, Stanhope BA, Ferrufino E, Tsuchiya D, Smith SE, Slaughter BD, Kowalko J, Rohner N, Keene AC, McGaugh SE. PLoS Genet. 2020;17:e1009642.
Chen W, Yu X, Wu Y, Tang J, Yu Q, Lv X, Zha Z, Hu B, Li X, Chen J, Ma L, Workman JL, Li S. Nat Metab. 2021;3:983-1000. doi: 10.1038/s42255-021-00412-9.
Kusuhara A, Babayev E, Zhou LT, Singh VP, Gerton JL, Duncan FE. Frontiers. 2021;9:Article 693742. doi: 693710.693389/fcell.692021.693742.
Gronowitz ME, Liu A, Qiu Q, Yu CR, Cleland TA. PLoS Comput Biol. 2021;17:e1009054. doi: 10.1371/journal.pcbi.1009054.
Zhang P, Zhang Z, Fu Y, Zhang Y, Washburn MP, Florens L, Wu M, Huang C, Hou Z, Mohan M. Cell Death Dis. 2021;12:608.
Weems JC, Slaughter BD, Unruh JR, Weaver KJ, Miller BD, Delventhal KM, Conaway JW, Conaway RC. J Biol Chem. 2021;297:100862.
Qiu Q, Wu Y, Ma L, Yu CR. Curr Biol. 2021;31:1813-1825 e1814.
Peloggia J, Munch D, Meneses-Giles P, Romero-Carvajal A, Lush ME, Lawson ND, McClain M, Pan YA, Piotrowski T. Dev Cell. 2021.
Niu K, Xu H, Xiong YZ, Zhao Y, Gao C, Seidel CW, Pan X, Ying Y, Lei K. Cell Regen. 2021;10:15.
Rasys AM, Pau SH, Irwin KE, Luo S, Kim H, Wahle MA, Trainor PA, Menke DB, Lauderdale JD. [published ahead of print April 19 2021]. Dev Dyn. 2021.
Logsdon GA, Vollger MR, Hsieh P, Mao Y, Liskovykh MA, Koren S, Nurk S, Mercuri L, Dishuck PC, Rhie A, de Lima LG, Dvorkina T, Porubsky D, Harvey WT, Mikheenko A, Bzikadze AV, Kremitzki M, Graves-Lindsay TA, Jain C, Hoekzema K, Murali SC, Munson KM, Baker C, Sorensen M, Lewis AM, Surti U, Gerton JL, Larionov V, Ventura M, Miga KH, Phillippy AM, Eichler EE. T [published ahead of print April 9 2021]. Nature. 2021.
Dash S, Bhatt S, Falcon KT, Sandell LL, Trainor PA. J Dent Res. 2021;100:406-414.
Qiu Q, Wu Y, Ma L, Xu W, Hills MJ, Ramalingam V, Yu CR. eLife. 2021;10:e60546. doi: 10.7554/eLife.60546.
Salim D, Bradford WD, Rubinstein B, Gerton JL. G3 (Bethesda). 2021:jkab082. doi:010.1093/g1093journal/jkab1082.
Rivera HE, Chen CY, Gibson MC, Tarrant AM. J Exp Biol. 2021;224: jeb236745. doi: 236710.231242/jeb.236745.
Ge X, Rubinstein BY, He Y, Bruce FNO, Li L, Leshansky AM, Li Z. [published ahead of print March 9 2021]. Lab Chip. 2021.
Warren WC, Boggs TE, Borowsky R, Carlson BM, Ferrufino E, Gross JB, Hillier L, Hu Z, Keene AC, Kenzior A, Kowalko JE, Tomlinson C, Kremitzki M, Lemieux ME, Graves-Lindsay T, McGaugh SE, Miller JT, Mommersteeg MTM, Moran RL, Peuss R, Rice ES, Riddle MR, Sifuentes-Romero I, Stanhope BA, Tabin CJ, Thakur S, Yamamoto Y, Rohner N. Nat Commun. 2021;12:1447.
Bhattacharya S, Levy MJ, Zhang N, Li H, Florens L, Washburn MP, Workman JL. Nat Commun. 2021;12:1443. doi: 1410.1038/s41467-41021-21663-w.
Tu R, Duan B, Song X, Chen S, Scott A, Hall K, Blanck J, DeGraffenreid D, Li H, Perera A, Haug J, Xie T. Curr Biol. 2021;31:827-839 e823.
Avsec Z, Weilert M, Shrikumar A, Krueger S, Alexandari A, Dalal K, Fropf R, McAnany C, Gagneur J, Kundaje A, Zeitlinger J. Nat Genet. 2021;53:354-366.
Singh NP, De Kumar B, Paulson A, Parrish ME, Scott C, Zhang Y, Florens L, Krumlauf R. [published ahead of print March 4 2021]. Dev Biol. 2021;9.
Ramalingam V, Natarajan M, Johnston J, Zeitlinger J. Mol Syst Biol. 2021;17:e9866.
Posey AE, Ruff KM, Lalmansingh JM, Kandola TS, Lange JJ, Halfmann R, Pappu RV. [published ahead of print February 5 2021]. J Mol Biol. 2021:166848.
Sardiu ME, Box AC, Haug JS, Washburn MP. Mol Omics. 2021;17:59-65.
Zhang S, Yu X, Zhang Y, Xue X, Yu Q, Zha Z, Gogol M, Workman JL, Li S. Nat Commun. 2021;12:594. doi: 510.1038/s41467-41020-20711-41461.
Jing Y, Montano JL, Levy M, Lopez JE, Kung PP, Richardson P, Krajewski K, Florens L, Washburn MP, Meier JL. ACS Chem Biol. 2021;16:27-34.
Pang J, Le L, Zhou Y, Tu R, Hou Q, Tsuchiya D, Thomas N, Wang Y, Yu Z, Alexander R, Thexton M, Lewis B, Corbin T, Durnin M, Li H, Ashery-Padan R, Yan D, Xie T. Cell Rep. 2021;34:108603. doi: 108610.101016/j.celrep.102020.108603.
Singh VP, Gerton JL. STAR Protoc. 2021;2:100242. doi: 10.1016/ j.xpro.2020.100242.
Medina-Munoz SG, Kushawah G, Castellano LA, Diez M, DeVore ML, Salazar MJB, Bazzini AA. [published ahead of print January 7 2021]. Genome Biol. 2021;22:14.
Shi S, Luo H, Wang L, Li H, Liang Y, Xia J, Wang Z, Cheng B, Huang L, Liao G, Xu B. Biomed Pharmacother. 2021;133:110906. doi: 110910.111016/j.biopha.112020.110906.
Reviews, Commentaries, Chapters or Books
Sasidharan V, Sánchez Alvarado A. Cold Spring Harb Perspect Biol. 2021:a040931. doi: 040910.041101/cshperspect.a040931.
Zanders S, Johannesson H. Microbiol Mol Biol Rev. 2021;85:e0001621. doi: 0001610.0001128/MMBR.0000016-0001621.
Church MC, Workman JL, Suganuma T.  Int J Mol Sci. 2021;22:10274. doi: 10210.13390/ijms221910274.
Singh NP.  Curr Biol. 2021;31:R1115-R1117.
Suganuma T, Workman JL. Front Endocrinol (Lausanne). 2021;12:731648.
Retinoic Acid signaling in vertebrate hindbrain segmentation:evolution and diversification
Bedois AMH, Parker HJ, Krumlauf R. Diversity. 2021;13:398.
Krumlauf R, Wilkinson DG. Development. 2021;148,dev186460. doi:10.1242/dev.186460.
Billmyre KK, Bravo Nunez MA, Bishop DK, Cole F. PLoS Genet. 2021;17:e1009648. doi: 10.1371/journal.pgen.1009648.
Husbandry Techniques for a Research Colony of Veiled Chameleons (Chamaeleo calyptratus)
Jewell D, Muensch A, Kupronis R, Baumann DP. Husbandry Techniques for a Research Colony of Veiled Chameleons (Chamaeleo calyptratus). Lab Anim Sci Prof. 2021;9:52-55.
Gerton JL. Proc Natl Acad Sci U S A. 2021;118:e2107030118.
Olsen L, Thum E, Rohner N. Dev Cell. 2021;56:1417-1429.
Billmyre KK, Hughes SE. Curr Biol. 2021;31:R454-R456.
Sánchez-Alvarado A. Int J Dev Biol. 2021;65:131-136.
Lake CM, Hawley RS. Curr Biol. 2021;31:R225-R227.
Kulesa PM, Kasemeier-Kulesa JC, Morrison JA, McLennan R, McKinney MC, Bailey C. Bull Math Biol. 2021;83:26.
Jaspersen SL. Curr Opin Struct Biol. 2021;66:22-31.
Venkatraman A, Smith SE, Pinho S, Zhao M, Li L, Frenette P. Methods Mol Biol. 2021;2185:373-382.
Gama AR, Miller T, Halfmann R. [published ahead of print January 19 2021].  Biophys J. 2021.
Iwanaga J, Singh V, Ohtsuka A, Hwang Y, Kim HJ, Morys J, Ravi KS, Ribatti D, Trainor PA, Sanudo JR, Apaydin N, Sengul G, Albertine KH, Walocha JA, Loukas M, Duparc F, Paulsen F, Del Sol M, Adds P, Hegazy A, Tubbs RS. Clin Anat. 2021;34:2-4.
© 2021 Stowers Institute for Medical Research