Publications
Publications
Supporting the scientific spirit of transparency, the Stowers Institute for Medical Research makes the data underlying its scientific publications freely accessible to the scientific community. Access to original, unprocessed data allows other scientists to validate and extend findings made by Stowers researchers.
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A Borrelia burgdorferi LptD homolog is required for flipping of surface lipoproteins through the spirochetal outer membrane
He H, Pramanik AS, Swanson SK, Johnson DK, Florens L, Zuckert WR. [published ahead of print April 28 2023]. Mol Microbiol. 2023.
Recombination between heterologous human acrocentric chromosomes
Guarracino A, Buonaiuto S, de Lima LG, Potapova T, Rhie A, Koren S, Rubinstein B, Fischer C, Human Pangenome Reference C, Gerton JL, Phillippy AM, Colonna V, Garrison E. Nature. 2023;617:335-343.
c-Myc promotes polyploidy in murine trophoblast cells and suppresses senescence
Singh VP, Hassan H, Deng F, Tsuchiya D, McKinney S, Ferro K, Gerton JL. [published ahead of print May 9 2023]. Development. 2023.
B chromosomes reveal a female meiotic drive suppression system in Drosophila melanogaster
Hanlon SL, Hawley RS. [publsihed ahead for print May 5 2023]. Curr Biol 2023;33:1-7.
Selection-driven trait loss in independently evolved cavefish populations
Moran RL, Richards EJ, Ornelas-Garcia CP, Gross JB, Donny A, Wiese J, Keene AC, Kowalko JE, Rohner N, McGaugh SE. Nat Commun. 2023;14:2557 doi: 10.1038/s41467-023-37909-8.
POLR1A variants underlie phenotypic heterogeneity in craniofacial, neural, and cardiac anomalies
Smallwood K, Watt KEN, Ide S, Baltrunaite K, Brunswick C, Inskeep K, Capannari C, Adam MP, Begtrup A, Bertola DR, Demmer L, Demo E, Devinsky O, Gallagher ER, Guillen Sacoto MJ, Jech R, Keren B, Kussmann J, Ladda R, Lansdon LA, Lunke S, Mardy A, McWalters K, Person R, Raiti L, Saitoh N, Saunders CJ, Schnur R, Skorvanek M, Sell SL, Slavotinek A, Sullivan BR, Stark Z, Symonds JD, Wenger T, Weber S, Whalen S, White SM, Winkelmann J, Zech M, Zeidler S, Maeshima K, Stottmann RW, Trainor PA, Weaver KN. Am J Hum Genet. 2023;110:809-825.
Morphological changes and two Nodal paralogs drive left-right asymmetry in the squamate veiled chameleon (C. calyptratus).
Shylo NA, Smith SE, Price AJ, Guo F, McClain M, Trainor PA. Front Cell Dev Biol. 2023;11:1132166 doi: 10.3389/fcell.2023.1132166.
Shared retinoic acid responsive enhancers coordinately regulate nascent transcription ofHoxb coding and non-coding RNAs in the developing mouse neural tube
Afzal Z, Lange JJ, Nolte C, McKinney S, Wood C, Paulson A, De Kumar B, Unruh J, Slaughter BD, Krumlauf R. [published online ahead of print]. Development. 2023 doi: 10.1242/dev.201259.
Dynamic fibronectin assembly and remodeling by leader neural crest cells prevents jamming in collective cell migration.
Martinson WD, McLennan R, Teddy JM, McKinney MC, Davidson LA, Baker RE, Byrne HM, Kulesa PM, Maini PK. eLife. 2023;12 doi: 10.7554/eLife.83792.
Circadian rhythm disruption linked to skeletal muscle dysfunction in the Mexican Cavefish
Olsen L, Krishnan J, Banks C, Hassan H, Rohner N. Curr Biol. 2023;33:R255-R256.
Next generation plasmids for transgenesis in zebrafish and beyond
Kemmler CL, Moran HR, Murray BF, Scoresby A, Klem JR, Eckert RL, Lepovsky E, Bertho S, Nieuwenhuize S, Burger S, D'Agati G, Betz C, Puller AC, Felker A, Ditrychova K, Botschi S, Affolter M, Rohner N, Lovely CB, Kwan KM, Burger A, Mosimann C.[publihsed ahead of print March 29 2023]. Development. 2023.
Pluripotency retention and exogenous mRNA introduction in planarian stem cells in culture
Lei K, Zhang W, Chen J, McKinney SA, Ross EJ, Lee HC, Sánchez Alvarado A. iScience. 2023;26:106001.
An improved germline genome assembly for the sea lamprey Petromyzon marinus illuminates the evolution of germline-specific chromosomes.
Timoshevskaya N, Eskut KI, Timoshevskiy VA, Robb SMC, Holt C, Hess JE, Parker HJ, Baker CF, Miller AK, Saraceno C, Yandell M, Krumlauf R, Narum SR, Lampman RT, Gemmell NJ, Mountcastle J, Haase B, Balacco JR, Formenti G, Pelan S, Sims Y, Howe K, Fedrigo O, Jarvis ED, Smith JJ. Cell Rep. 2023;42:112263.
DAmFRET measures saturating concentrations and toxicities of protein phase transitions in vivo
Miller T, Wu J, Venkatesan S, Gama AR, Halfmann R. Mol Biol Cell. 2023:mbcE22110503.
Diet-induced loss of adipose hexokinase 2 correlates with hyperglycemia
Shimobashi M, Thomas A, Shetty S, Frei IC, Wolnerhanssen BK, Weissenberger D, Vandekeere A, Planque M, Dietz N, Ritz D, Meyer-Gerspach AC, Maier T, Hay N, Peterli R, Fendt SM, Rohner N, Hall MN. eLife. 2023;12:e85103. doi.org/85110.87554/eLife.85103.
A molecular cell biology toolkit for the study of meiosis in the silkworm Bombyx mori.
Xiang Y, Tsuchiya D, Guo F, Gardner J, McCroskey S, Price A, Tromer EC, Walters JR, Lake CM, Hawley RS. G3 (Bethesda). 2023:jkad058. doi: 010.1093/g1093journal/jkad1058. doi: 10.1093/g3journal/jkad058.
Identifying dynamical persistent biomarker structures for rare events using modern integrative machine learning approach
Dutta S, Box AC, Li Y, Sardiu ME. Proteomics. 2023:e2200290.
Cell-type profiling of the sympathetic nervous system using spatial transcriptomics and spatial mapping of mRNA..
Kasemeier-Kulesa JC, Morrison JA, McKinney S, Li H, Gogol M, Hall K, Chen S, Wang Y, Perera A, McLennan R, Kulesa PM. published ahead of print February 24 2023]. [Dev Dyn. 2023.
Off-target piRNA gene silencing in Drosophila melanogaster rescued by a transposable element insertion
Miller DE, Dorador AP, Van Vaerenberghe K, Li A, Grantham EK, Cerbin S, Cummings C, Barragan M, Egidy RR, Scott AR, Hall KE, Perera A, Gilliland WD, Hawley RS, Blumenstiel JP. PLoS Genet. 2023;19:e1010598 doi: 10.1371/journal.pgen.1010598.
Meiotic nuclear pore complex remodeling provides key insights into nuclear basket organization
King GA, Wettstein R, Varberg JM, Chetlapalli K, Walsh ME, Gillet LCJ, Hernandez-Armenta C, Beltrao P, Aebersold R, Jaspersen SL, Matos J, Unal E. J Cell Biol. 2023;222:e202204039. doi: 10.1083/jcb.202204039.
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(mis)‑Targeting of SWI/SNF complex(es) in cancer
Reddy D, Bhattacharya S, Workman JL. Cancer Metastasis Rev. 2023.
What new questions can we ask about transcriptional regulation given recent developments in large-scale approaches?
Nora EP, Aerts S, Wittkopp PJ, Bussemaker HJ, Bulyk M, Sinha S, Zeitlinger J, Crocker J, Fuxman Bass JI. Cell Syst. 2023;14:247-251.
Establishment, long-term maintenance, and Characterization of Primary Liver Cells from Astyanax mexicanus
Rajendran N, Deng F, Wang Y, Kenzior O, Krishnan J, Biswas T, Parmely T, Rohner N, Zhao C. Curr Protoc. 2023;3:e736.
Personal Autonomy and Self-Determination are Crucial for Professionalism in Healthcare
Organ JM, Smith HF, Trainor PA, Allen K, Balta J, Beresheim AB, Brewer-Deluce D, Brown KM, Burrows AM, Byers KT, Byram JN, Cale AS, Carroll MA, Champney T, Cornwall J, Dayal MR, DeLeon VB, Dunnwald M, Ferrigno C, Finn GM, Fox GM, Geller PL, Guttmann GD, Harper N, Harrell KM, Hartstone-Rose A, Hildebrandt S, Hortsch M, Jackson J, Johnson LE, Lohman Bonfiglio CM, McCumber TL, Menegaz RA, Mussell JC, O'Loughlin VD, Otobo T, Oyedele O, Pascoe MA, Person D, Reidenberg JS, Robinson RE, Rogers KA, Ros MA, Ross CF, Sanders KA, Schmitt B, Schoenwolf GC, Smith TD, Smith TC, Sumner DR, Taylor AB, Taylor MJ, Teaford MF, Topp KS, Willmore KE, Wisco JJ, Yang J, Zumwalt AC. [published ahead of print April 5 2023]. Anat Sci Educ 2023.
Translation and mRNA Stability Control
Wu Q, Bazzini AA. [published ahead of print April 1 2023]. Annu Rev Biochem 2023.
Epithelial to mesenchymal transition during mammalian neural crest cell delamination
Zhao R, Trainor PA. Semin Cell Dev Biol. 2023;138:54-67.
RNA Polymerases I and III in development and disease
Watt KE, Macintosh J, Bernard G, Trainor PA. Semin Cell Dev Biol. 2023;136:49-63.
Gene-environment interactions in the pathogenesis of common craniofacial anomalies
Fitriasari S, Trainor PA. Curr Top Dev Biol. 2023;152:139-168.
ISSCR Education Committee Syllabus and Learning Guide for Enhancing Stem Cell Literacy
Perlin JR, Anderson WJ, Bartfeld S, Couturier A, de Soysa Y, Hawley RS, Hu P, Loh YH, Mandal L, Master Z, Muotri AR, Piddini E, Polo JM, Mazzoni EO. Stem Cell Rep. 2023;18:417-419
Emerging Model Organisms
Wang W, Rohner N, Wang Y, eds. Neuromethods, Springer Protocols: Humana Press. 2023.
Cell culture: in vitro model system and a promising path to in vivo applications
Zhao C.. J Histotechnol. 2023;46:1-4 doi: 10.1080/01478885.2023.2170772.
Generation of mini-brains from hiPSCs
Wang Y, Tsuchiya D, Zhao C. In: W Wang, Y Wang, and N Rohner, eds. Emerging model organism. New York, New York: Humana, New Yor, NY; 2023;194:291-306.
Multiplexed Quantitative Proteomics Analysis of Developing Human Brain Organoids
Florens L, Saraf A, Hao Y, Zhang Y, Wang Y, Parmely TJ, Zhao C, Washburn MP. In: W Wang, Y Wang, and N Rohner, eds. Emerging Model Organisms; 2023;194:325-355.
Off the deep end: What can deep learning do for the gene expression field?
Raicu AM, Fay JC, Rohner N, Zeitlinger J, Arnosti DN. J Biol Chem. 2023;299:102760.
Chromosome-specific behaviors during early meiosis
Billmyre KK. Curr Top Dev Biol. 2023;151:127-154.
