Publications

Original Research Papers
Driving Integrative Structural Modeling with Serial Capture Affinity Purification
Liu X, Zhang Y, Wen Z, Hao Y, Banks CAS, Lange JJ, Slaughter BD, Unruh JR, Florens L, Abmayr SM, Workman JL, Washburn MP. [Published ahead of print November 30 2020]. PNAS. 2020.
Gonzalez-Arranz S, Gardner JM, Yu Z, Patel NJ, Heldrich J, Santos B, Carballo JA, Jaspersen SL, Hochwagen A, San-Segundo PA. Front Cell Dev Biol. 2020;8:594092.
Singh NP, De Kumar B, Paulson A, Parrish ME, Zhang Y, Florens L, Conaway JW, Si K, Krumlauf R. [published ahead of print November 14 2020]. Genes Dev. 2020.
Dash S, Bhatt S, Falcon KT, Sandell LL, Trainor PA. [published ahead of print November 7 2020]. J Dent Res. 2020.
Nuckolls NL, Mok AC, Lange JJ, Yi K, Kandola TS, Hunn AM, McCroskey S, Snyder JL, Bravo Nunez MA, McClain M, McKinney SA, Wood C, Halfmann R, Zanders SE.  eLife. 2020;9:e55694. doi: 55610.57554/eLife.55694.
The Mediator subunit, Med23 is required for embryonic survival and regulation of canonical WNT signaling during cranial ganglia development
Dash S, Bhatt S, Sandell L, Seidel C, Ahn Y, Krumlauf R, Trainor P. Front Physiol. 2020;11:531933. doi: 531910.533389/fphys.532020.531933.
Wesley ER, Hawley RS, Billmyre KK.  [published ahead of print October 18 2020]. Chromosoma. 2020.
Bhattacharya S, Workman J. L. Epigentics Chromatin. 2020;13:40.
Box A, DeLay M, Tighe S, Chittur SV, Bergeron A, Cochran M, Lopez P, Meyer EM, Saluk A, Thornton S, Brundage K. J Biomol Tech : JBT. 2020;31:100-111.
Miller DE, Kahsai L, Buddika K, Dixon MJ, Kim BY, Calvi BR, Sokol NS, Hawley RS, Cook KR. [published ahead of print September 26 2020]. G3 (Bethesda). 2020.
Chen CY, McKinney SA, Ellington LR, Gibson MC. eLife. 2020;9:e54573. doi: 54510.54577.54554/eLife.54573.
de Lima LG, Hanlon SL, Gerton JL. [published ahead of print SeptemberG3 (Bethesda). 2020;10.
Sardiu ME, Box AC, Haug JS, Washburn MP. [published ahead of print September 15 2020]. Mol Omics. 2020.
ao F, Soffers J, Hu D, Chen S, Gao X, Zhang Y, Zhao C, Smith SE, Unruh JR, Zhang D, Tsuchiya D, Venkatraman A, Zhao M, Li Z, Qian P, Parmely T, He XC, Washburn M, Florens L, Perry JM, Zeitlinger J, Workman J, Li L. Stem Cell Rep. 2020;15:662-676.
Ikmi A, Steenbergen PJ, Anzo M, McMullen MR, Stokkermans A, Ellington LR, Gibson MC. Nat Commun. 2020;11:4399. doi: 4310.1038/s41467-41020-18133-41460.
Wang W, Hu CK, Zeng A, Alegre D, Hu D, Gotting K, Ortega Granillo A, Wang Y, Robb S, Schnittker R, Zhang S, Alegre D, Li H, Ross E, Zhang N, Brunet A, Sanchez Alvarado A. Science. 2020;369: eaaz3090. doi: 10.1126/science.aaz3090.
Panoutsopoulos AA, De Crescenzo A, Lee A, Lu AM, Ross AP, Yarov-Yarovoy V, Borodinsky L, Marcucio R, Trainor P, Zarbalis K. Front Cell Dev Biol. 2020;8:510063. doi: 510010.513389/fcell.512020.510063.
Geymonat M, Peng Q, Guo Z, Yu Z, Unruh JRJ, S. L., Segal M. eLife. 2020;9:e5922. doi: 10.7554/eLife.59222.
Bravo Nunez MA, Sabbarini IM, Eide LE, Unckless RL, Zanders SE. eLife. 2020;9:e57936. doi: 57910.57554/eLife.57936.
Kushawah G, Hernandez-Huertas L, Abugattas-Nunez Del Prado J, Martinez-Morales JR, DeVore ML, Hassan H, Moreno-Sanchez I, Tomas-Gallardo L, Diaz-Moscoso A, Monges DE, Guelfo JR, Theune WC, Brannan EO, Wang W, Corbin TJ, Moran AM, Sanchez Alvarado A, Malaga-Trillo E, Takacs CM, Bazzini AA, Moreno-Mateos MA. [published ahead of print August 10 2020]. Dev Cell. 2020.
Ono K, Sandell LL, Trainor PA, Wu DK. [published ahead of print August 7 2020]. Development. 2020;147.
Wu Q, Wright M, Gogol MM, Bradford WD, Zhang N, Bazzini AA. Embo J. 2020:e104763. doi:10.15252/embj.2020104763
Peuß R, Box AC, Chen S, et al. [published online ahead of print, 2020 Jul 20]. Nat Ecol Evol. 2020;10.1038/s41559-020-1234-2. doi:10.1038/s41559-020-1234-2.
Wu J, Tian Y, Han L, Liu C, Sun T, Li L, Yu Y, Lamichhane B, D'Souza RN, Millar SE, Krumlauf R, Ornitz DM, Feng JQ, Klein O, Zhao H, Zhang F, Linhardt RJ, Wang X. BMC Biol. 2020;18:87. https://doi.org/10.1186/s12915-12020-00813-12914.
Miga KH, Koren S, Rhie A, et al. [published online ahead of print, 2020 Jul 14]. Nature. 2020;10.1038/s41586-020-2547-7. doi:10.1038/s41586-020-2547-7.
Fu M, Barlow-Anacker AJ, Kuruvilla KP, Bowlin GL, Seidel CW, Trainor PA, FASEB J. 2020;34:10931–10947.
Sas-Chen, A., Thomas, J.M., Matzov, D. etNature. 2020;583:638–643. https://doi.org/10.1038/s41586-020-2418-2.
Vijay Pratap Singh, Sean McKinney, Jennifer L. Gerton. [published ahead of print June 16 2020]. Dev Cell. 2020. doi: 10.1016/j.devcel.2020.05.025.
Perry JM, Tao F, Roy A, Lin T, He XC, Chen S, Lu X, Nemechek J, Ruan L, Yu X, Dukes D, Moran A, Pace J, Schroeder K, Zhao M, Venkatraman A, Qian P, Li Z, Hembree M, Paulson A, He Z, Xu D, Tran TH, Deshmukh P, Nguyen CT, Kasi RM, Ryan R, Broward M, Ding S, Guest E, August K, Gamis AS, Godwin A, Sittampalam GS, Weir SJ, Li L. Nat Cell Biol. 2020;22:689-700
Adams MK, Banks CAS, Thornton JL, Kempf C, Zhang Y, Miah S, Hao Y, Sardiu ME, Killer M, Hattem G, Murray A, Katt M, Florens LA, Washburn MP. [published ahead of print May 30 2020] Mol Cell Proteomics. 2020.
McKinney MC, McLennan R, Giniunaite R, Baker RE, Maini PK, Othmer HG, Kulesa PM. Dev Biol. 2020;461:184-196.
Park DE, Cheng J, McGrath JP, Lim MY, Cushman C, Swanson SK, Tillgren ML, Paulo JA, Gokhale PC, Florens L, Washburn MP, Trojer P, DeCaprio JA. Nat Cell Biol. 2020;22:603-615. Author Correction: Nat Cell Biol. 2020;22:752.
Banks, C.A.S., Zheng,Y., Miah, S., Hoa, Y., Adams, M. K., Wen, Z., Thornton, J. L., Florens, L., Washburn, M. P. Cell Rep. 2020:31;107516. doi: 10.1016/j.celrep.
Lee IJ, Stokasimov E, Dempsey N, Varberg JM, Jacob E, Jaspersen SL, Pellman D. [published ahead of print April 4 2020] J Cell Biol. 2020:219;e201908232.
Levy MJ, Montgomery DC, Sardiu ME, Montano JL, Bergholtz SE, Nance KD, Thorpe AL, Fox SD, Lin Q, Andresson T, Florens L, Washburn MP, Meier JL. Cell Chem Biol. 2020;27:322-333.e5.
Vidakovic AT, Mitter R, Kelly GP, Neumann M, Harreman M, Martinez MR, Herlihy A, Weems J, Boeing S, Encheva V, Gaul L, Milligan L, Tollervey D, Conaway R, Conaway J, Snijders AP, Stewart A, Svejstrup JQ. Cell. 2020;180:1245-1261.
Hervas R, Rau MJ, Park Y, Zhang W, Murzin AG, Fitzpatrick JAJ, Scheres SHW, Si K. Science. 2020;367:1230-1234.
Yasukawa T, Tsutsui A, Tomomori-Sato C, Soto S, Saraf A, Washburn MP, Florens L, Terada T, Shimizu K, Conaway RC, Conaway JW, Aso T. Cell Rep. 2020;30:3478-3491.e6. doi: 10.1016/j.celrep.2020.02.059.
Takahashi H, Ranjan A, Chen S, Suzuki H, Shibata M, Hirose T, Hirose H, Sasaki K, Abe R, Chen K, He Y, Zhang Y, Takigawa I, Tsukiyama T, Watanabe M, Fujii S, Iida M, Yamamoto J, Yamaguchi Y, Suzuki Y, Matsumoto M, Nakayama KI, Washburn MP, Saraf A, Florens L, Sato S, Tomomori-Sato C, Conaway RC, Conaway JW, Hatakeyama S. Nat Commun. 2020;11:1063. doi: 10.1038/s41467-020-14849-1.
Chen J, Yu Z, Unruh JR, Slaughter BD, Jaspersen SL. Bio-Protocol. 2020;10:e3524. doi: 3510.21769/BioProtoc.23524.
Hu CK, Wang W, Brind'Amour J, Singh PP, Reeves GA, Lorincz MC, Sánchez Alvarado A, Brunet A. Science. 2020;367:870-874.
Zou F, Tu R, Duan B, Yang Z, Ping Z, Song X, Chen S, Price A, Li H, Scott A, Perera A, Li S, Xie T. Proc Natl Acad Sci U S A. 2020;117:3603-3609.
Bravo Nunez MA, Sabbarini IM, Eickbush MT, Liang Y, Lange JJ, Kent AM, Zanders SE. PLoS Genet. 2020;16:e1008350. doi: 1008310.1001371/journal.pgen.1008350.
Krishnan J, Persons JL, Peuss R, Hassan H, Kenzior A, Xiong S, Olsen L, Maldonado E, Kowalko JE, Rohner N. [published ahead of print February 6 2020]. J Exp Zool B Mol Dev Evol. 2020.
Batugedara G, Lu XM, Saraf A, Sardiu ME, Cort A, Abel S, Prudhomme J, Washburn MP, Florens L, Bunnik EM, Le Roch KG. [published ahead of print February 6 2020]. Microb Genom. 2020.
Kim JW, Berrios C, Kim M, Schade AE, Adelmant G, Yeerna H, Damato E, Iniguez AB, Florens L, Washburn MP, Stegmaier K, Gray NS, Tamayo P, Gjoerup O, Marto JA, DeCaprio J, Hahn WC. eLife. 2020;9. doi: 10.7554/eLife.53003.
Shefchek KA, Harris NL, Gargano M, Matentzoglu N, Unni D, Brush M, Keith D, Conlin T, Vasilevsky N, Zhang XA, Balhoff JP, Babb L, Bello SM, Blau H, Bradford Y, Carbon S, Carmody L, Chan LE, Cipriani V, Cuzick A, Rocca MD, Dunn N, Essaid S, Fey P, Grove C, Gourdine JP, Hamosh A, Harris M, Helbig I, Hoatlin M, Joachimiak M, Jupp S, Lett KB, Lewis SE, McNamara C, Pendlington ZM, Pilgrim C, Putman T, Ravanmehr V, Reese J, Riggs E, Robb S, Roncaglia P, Seager J, Segerdell E, Similuk M, Storm AL, Thaxon C, Thessen A, Jacobsen JOB, McMurry JA, Groza T, Kohler S, Smedley D, Robinson PN, Mungall CJ, Haendel MA, Munoz-Torres MC, Osumi-Sutherland D. Nucleic Acids Res. 2020;48:D704-D715.
Reviews, Commentaries, Chapters or Books
Ma R, Wu Y, Zhai Y, Hu B, Ma W, Yang W, Yu Q, Chen Z, Workman JL, Yu X, Li S. Nucleic Acids Res. 2019;47:11132-11150.
Barton CL, Baumann DP, Cox JD. In: SC Cartner, JS Eisen, SC Farmer, KJ Guillemin, ML Kent, and GE Sanders, eds. The Zebrafish in Biomedical Research : Biology, Husbandry, Diseases, and Research Applications. Academic Press; 2020:443-450.
Miller DE, Cook KR, Hawley RS. PLoS Genet. 2019;15:e1008421. doi: 1008410.1001371/journal.pgen.1008421.
Bhattacharya S, Workman JL. [published ahead of print October 23 2019]. Biochemistry. 2019.
Bland K, Orr AA. Mo Med. 2019;116:457-460.
Adams MK, Banks CAS, Miah S, Killer M, Washburn MP. Methods Enzymol. 2019;626:23-40.
Denans N, Baek S, Piotrowski T. Annu Rev Cell Dev Biol. 2019;35:568-589.
Popova VV, Workman JL. Nat Cell Biol. 2019;21:1177-1178.
Smoyer CJ, Jaspersen SL. Curr Genet. 2019;65:1099-1106.
Conaway RC, Conaway JW. Nat Struct Mol Biol. 2019;26:771-776.
Duncan EM, Sánchez Alvarado A. Annu Rev Genet. 2019;53:16.1–16.20.
He S, Grasis JA, Nicotra ML, Juliano CE, Schnitzler CE. EvoDevo. 2019;10:20. doi: 10.1186/s13227-13019-10134-13225.
Abmayr SM, Workman JL. Cell Res. 2019;29:694-695.
Daugherty MD, Zanders SE. v.Curr Opin Genet De 2019;58:49-54.
De Carvalho M, Zanders SE. eLife. 2019;8:e46454. doi: 46410.47554/eLife.46454.
Barajas-Azpeleta R, Si K. eLife. 2019;8:e48899. doi: 48810.47554/eLife.48899.
Li Z, He XC, Li L. Curr Opin Hematol. 2019;26:258-265.
Zanders SE, Unckless RL. Curr Biol. 2019;29:R512-R520.
Kline AD, Krantz ID, Bando M, Shirahige K, Chea S, Sakata T, Rao S, Dorsett D, Singh VP, Gerton JL, Horsfield JA, Calof AL, Katz O, Grados M, Raible S, Baranano K, Lyon G, Musio A, Carrico CS, Clemens DK, Caudill P, Massa V, McGill BE, Dommestrup A, O'Connor J, Haaland RE. Am J Med Genet A. 2019;179:1030-1090.
Nolte C, De Kumar B, Krumlauf R. Genesis. 2019:e23306. doi: 10.1002/dvg.23306.
Venkatraman A, Li L. Nat Cell Biol. 2019;21:540-541.
Munoz WA, Trainor PA. Methods Mol Biol: Meiosis. 2019;1976:107-119.
Xu, X., Li L, Zhang C, Meng L. J Assist Reprod Genet. 2019;36:601-602. Correction: J Assist Reprod Genet. 2019 Jul 31. pii: 10.1007/s10815-019-01539-1. doi: 10.1007/s10815-019-01539-1.
Krishnan J, Rohner N. J Diabetes. 2019;11:193-203.
Salim D, Gerton JL. Chromosome Res. 2019;27:73-87.
Potapova TA, Gerton JL. Chromosome Res. 2019;27:109-127.
Taneyhill LA, Moody SA, Cox T, Klein OD, Marcucio R, Schneider RA, Trainor PA. Am J Med Genet A. 2019;179:864-869.
Moustakas-Verho JE, McLennan R, Spengler J, Kulesa PM, Cebra-Thomas JA. Methods Mol Biol. 2019;1920:247-263. Author's Correction: Methods Mol Biol. 2019;1920:C1.
Diaz Jr. RE, Trainor PA. In: Ziermann, D Jr., and Diogo, eds. Heads, Jaws and Muscles Anatomical, Functional and Developmental Diversity in Chordate Evolution, Springer; 2019:207-227.
Porokhovnik L, Gerton JL. Chromosome Res. 2019;27:1-3.
Hu D, Yan H, He XC, Li L.  F1000Res. 2019;8:F1000 Faculty Rev-72. Published 2019 Jan 18. doi:10.12688/f1000research.16793.1