Publications
Publications
Supporting the scientific spirit of transparency, the Stowers Institute for Medical Research makes the data underlying its scientific publications freely accessible to the scientific community. Access to original, unprocessed data allows other scientists to validate and extend findings made by Stowers researchers.
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Analysis of FAIMS for the study of affinity-purified protein complexes using the orbitrap ascend tribrid mass spectrometer
Goswami P, Cesare J, Rekowski MJ, Clark Z, Thornton J, Washburn MP. Mol Omics. 2025.
Chromatin remodeling protein BPTF mediates chromatin accessibility at gene promoters in planarian stem cells
Verma P, Allen JM, Sanchez Alvarado A, Duncan EM. BMC Genomics. 2025;26:232.
An atypical basement membrane forms a midline barrier during left-right asymmetric gut development in the chicken embryo
Demler C, Lawlor JC, Yelin R, Llivichuzcha-Loja D, Shaulov L, Kim D, Stewart M, Lee FK, Shylo N, Trainor PA, Schultheiss TM, Kurpios NA. Elife. 2025;12.
Splicing Defects and Cell Death Cause SF3B2-Linked Craniofacial Microsomia.
Rao S, Watt KEN, Maili L, Lamb M, Farrow E, Hassan H, Weaver K, Miller B, Dash S, Cox LL, Gallacher L, Kant SG, Gibson M, Pastinen T, Li D, Bhoj EJK, Zhu H, Zhang J, Zhang YB, Tan TY, Trainor PA, Cox TC. J Dent Res. 2025:220345251325818.
ZNF574 is a Quality Control Factor for Defective Ribosome Biogenesis Intermediates
Akers JF, LaScola M, Bothe A, Suh H, Jung C, Stolp ZD, Ghosh T, Yan LL, Wang Y, Macurak M, Devan A, McKinney MC, Grismer TS, Reyes AV, Ross EJ, Hu T, Xu SL, Ban N, Kostova KK. [published ahead of print May 2025.] Mol Cell. 2025.
Landscape of essential growth and fluconazole-resistance genes in the human fungal pathogen Cryptococcus neoformans
Billmyre RB, Craig CJ, Lyon JW, Reichardt C, Kuhn AM, Eickbush MT, Zanders SE. PLoS Biol
bioRxiv. 2025;23:e3003184.
Pre-oviposition development of the brown anole (Anolis sagrei)
Weberling A, Shylo NA, Kircher BK, Wilson H, McClain M, Marchini M, Starr KB, Sanger TJ, Hollfelder F, Trainor PA. Dev Dyn. 2025.
Torque-driven superparamagnetic microbots
Morozov KI, Zusmanovich D, Rubinstein B, Leshansky A. Physics of Fluids. 2025;37:012017.
Reproductive Adaptation of Astyanax mexicanus Under Nutrient Limitation
Xia F, Santacruz A, Wu D, Bertho S, Fritz E, Morales-Sosa P, McKinney S, Nowotarski SH, Rohner N. Dev Biol. 2025.
Differentially expressed miRNAs offer new perspective into cave adaptation of Astyanax mexicanus
Biswas T, Hassan H, Rohner N. Ann N Y Acad Sci. 2025.
Investigating the Aggregation and Prionogenic Properties of Human Cancer-Related Proteins.
Goncharoff D, Du Z, Venkatesan S, Cho B, Zhao J, Alasady MJ, Huey D, Ma H, Rosenthal J, Turenitsa A, Feldman C, Halfmann R, Mendillo ML, Li L. Mol Cell Biol. 2025:1-15.
Complete sequencing of ape genomes
Yoo D, Rhie A, Hebbar P, Antonacci F, Logsdon GA, Solar SJ, Antipov D, Pickett BD, Safonova Y, Montinaro F, Luo Y, Malukiewicz J, Storer JM, Lin J, Sequeira AN, Mangan RJ, Hickey G, Monfort Anez G, Balachandran P, Bankevich A, Beck CR, Biddanda A, Borchers M, Bouffard GG, Brannan E, Brooks SY, Carbone L, Carrel L, Chan AP, Crawford J, Diekhans M, Engelbrecht E, Feschotte C, Formenti G, Garcia GH, de Gennaro L, Gilbert D, Green RE, Guarracino A, Gupta I, Haddad D, Han J, Harris RS, Hartley GA, Harvey WT, Hiller M, Hoekzema K, Houck ML, Jeong H, Kamali K, Kellis M, Kille B, Lee C, Lee Y, Lees W, Lewis AP, Li Q, Loftus M, Loh YHE, Loucks H, Ma J, Mao Y, Martinez JFI, Masterson P, McCoy RC, McGrath B, McKinney S, Meyer BS, Miga KH, Mohanty SK, Munson KM, Pal K, Pennell M, Pevzner PA, Porubsky D, Potapova T, Ringeling FR, Rocha JL, Ryder OA, Sacco S, Saha S, Sasaki T, Schatz MC, Schork NJ, Shanks C, Smeds L, Son DR, Steiner C, Sweeten AP, Tassia MG, Thibaud-Nissen F, Torres-Gonzalez E, Trivedi M, Wei W, Wertz J, Yang M, Zhang P, Zhang S, Zhang Y, Zhang Z, Zhao SA, Zhu Y, Jarvis ED, Gerton JL, Rivas-Gonzalez I, Paten B, Szpiech ZA, Huber CD, Lenz TL, Konkel MK, Yi SV, Canzar S, Watson CT, Sudmant PH, Molloy E, Garrison E, Lowe CB, Ventura M, O'Neill RJ, Koren S, Makova KD, Phillippy AM, Eichler EE. Nature 2025.
Highly Optimized Simulation of Atomic Resolution Cell-Like Protein Environment
Tytarenko AM, Singh A, Ambati VK, Copeland MM, Kundrotas PJ, Halfmann R, Kasyanov PO, Feinberg EA, Vakser IA. J Phys Chem B. 2025;129:3183-3190.
Enhanced RNA-targeting CRISPR-Cas technology in zebrafish
Moreno-Sanchez I, Hernandez-Huertas L, Nahon-Cano D, Martinez-Garcia PM, Treichel AJ, Gomez-Marin C, Tomas-Gallardo L, da Silva Pescador G, Kushawah G, Egidy R, Perera A, Diaz-Moscoso A, Cano-Ruiz A, Walker JA, 2nd, Munoz MJ, Holden K, Galceran J, Nieto MA, Bazzini AA, Moreno-Mateos MA. Nat Commun. 2025;16:2591.
DCLK1-mediated regulation of invadopodia dynamics and matrix metalloproteinase trafficking drives invasive progression in head and neck squamous cell carcinoma
Arnold L, Yap M, Farrokhian N, Jackson L, Barry M, Ly T, Arjunan P, Kaczorowski-Worthley A, Tews C, Pandey A, Morrison A, Washburn MP, Standing D, Gomez JP, Yellapu NK, Johnson D, Li L, Umar S, Anant S, Thomas SM. Mol Cancer. 2025;24:50.
SNORD113–114 cluster maintains haematopoietic stem cell self-renewal via orchestrating the translation machinery
Wang H, Zhang Z, Han C, Jiang P, Xu J, Han Y, Huang D, Li J, Zhou J, Durnin M, Chen S, Liu Y, Sheng J, Cao J, Liu J, Liu B, Yu J, Wang F, Qian P. Nat Cell Biol. 2025;27:246-261.
Cell extrusion drives neural crest cell delamination.
Moore Zajic EL, Zhao R, McKinney MC, Yi K, Wood C, Trainor PA. Proc Natl Acad Sci U S A. 2025;122:e2416566122 doi: 10.1073/pnas.2416566122.
Oogenesis involves a novel nuclear envelop remodeling mechanism in Schmidtea mediterranea
Guo L, Guo F, Zhang S, Zeng A, Yi K, McClain M, Kuhn CD, Parmely T, Sanchez Alvarado A. Dev Biol. 2025;520:13-20.
Patterns of crossover distribution in Drosophila mauritiana necessitate a re-thinking of the centromere effect on crossing over
Hawley RS, Price A, Li H, Jagannathan M, Staber C, Hughes SE, Williams S, Perera A, Egidy RR, Lawlor A, Miller DE, Blumenstiel JP. Genetics 2024.
Comparative analysis of neural crest development in chick and mouse
Morrison JA, Pushel I, McLennan R, McKinney MC, Gogol MM, Scott A, Krumlauf R, Kulesa PM. Dev Biol. 2024;519:142-149.
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From conservation to adaptation: Understanding the Synaptonemal Complex's evolutionary dynamics.
Williams S, Hawley RS. Curr Opin Genet Dev. 2025;93:102349.
Signalling by co-operative higher-order assembly formation: linking evidence at molecular and cellular levels
Kobe B, Nanson JD, Hoad M, Blumenthal A, Gambin Y, Sierecki E, Stacey KJ, Ve T, Halfmann R. Biochem J. 2025;482:275-294.
The Society for Craniofacial Genetics and Developmental Biology 47th Annual Meeting
Trainor PA, Cox TC, Clouthier DE, Fantauzzo KA, Harris MP, Jeong J, Stottmann RW, Merrill AE. Am J Med Genet A. 2025:e64059.
NCR peptides in plant-bacterial symbiosis: applications and importance
Guerra-Garcia FJ, Sankari S. Trends Microbiol. 2025;33:147-150.
