Publications

Original Research Papers
Translation of small downstream ORFs enhances translation of canonical main open reading frames
Wu Q, Wright M, Gogol MM, Bradford WD, Zhang N, Bazzini AA. Embo J. 2020:e104763. https://doi.org/10.15252/embj.2020104763.
Peuß R, Box AC, Chen S, et al. [published online ahead of print, 2020 Jul 20]. Nat Ecol Evol. 2020;10.1038/s41559-020-1234-2. doi:10.1038/s41559-020-1234-2.
Miga KH, Koren S, Rhie A, et al. [published online ahead of print, 2020 Jul 14]. Nature. 2020;10.1038/s41586-020-2547-7. doi:10.1038/s41586-020-2547-7.
Sas-Chen, A., Thomas, J.M., Matzov, D. etNature. 2020;583:638–643. https://doi.org/10.1038/s41586-020-2418-2.
Persistent DNA damage and senescense in the placenta impacts developmental outcomes of embryos
Vijay Pratap Singh, Sean McKinney, Jennifer L. Gerton. [published ahead of print June 16 2020].  Dev Cell. 2020. DOI: 10.1016/j.devcel.2020.05.025
Adams MK, Banks CAS, Thornton JL, Kempf C, Zhang Y, Miah S, Hao Y, Sardiu ME, Killer M, Hattem G, Murray A, Katt M, Florens LA, Washburn MP. [published ahead of print May 30 2020] Mol Cell Proteomics. 2020.
Park DE, Cheng J, McGrath JP, Lim MY, Cushman C, Swanson SK, Tillgren ML, Paulo JA, Gokhale PC, Florens L, Washburn MP, Trojer P, DeCaprio JA. Nat Cell Biol. 2020;22:603-615. Author Correction: Nat Cell Biol. 2020;22:752.
Dlp-Mediated Hh and Wnt Signaling Interdependence Is Critical in the Niche for Germline Stem Cell Progeny Differentiation
Tu R, Duan B, Song X, Xie T. Sci Adv 2020;6:eaaz0480.
Banks, C.A.S., Zheng,Y., Miah, S., Hoa, Y., Adams, M. K., Wen, Z., Thornton, J. L., Florens, L., Washburn, M. P. Cell Rep. 2020:31;107516. doi: 10.1016/j.celrep.
Lee IJ, Stokasimov E, Dempsey N, Varberg JM, Jacob E, Jaspersen SL, Pellman D. [published ahead of print April 4 2020] J Cell Biol. 2020:219;e201908232.
Levy MJ, Montgomery DC, Sardiu ME, Montano JL, Bergholtz SE, Nance KD, Thorpe AL, Fox SD, Lin Q, Andresson T, Florens L, Washburn MP, Meier JL. Cell Chem Biol. 2020;27:322-333.e5.
Vidakovic AT, Mitter R, Kelly GP, Neumann M, Harreman M, Martinez MR, Herlihy A, Weems J, Boeing S, Encheva V, Gaul L, Milligan L, Tollervey D, Conaway R, Conaway J, Snijders AP, Stewart A, Svejstrup JQ. Cell. 2020;180:1245-1261.
Hervas R, Rau MJ, Park Y, Zhang W, Murzin AG, Fitzpatrick JAJ, Scheres SHW, Si K. Science. 2020;367:1230-1234.
Yasukawa T, Tsutsui A, Tomomori-Sato C, Soto S, Saraf A, Washburn MP, Florens L, Terada T, Shimizu K, Conaway RC, Conaway JW, Aso T. Cell Rep. 2020;30:3478-3491.e6. doi: 10.1016/j.celrep.2020.02.059.
Takahashi H, Ranjan A, Chen S, Suzuki H, Shibata M, Hirose T, Hirose H, Sasaki K, Abe R, Chen K, He Y, Zhang Y, Takigawa I, Tsukiyama T, Watanabe M, Fujii S, Iida M, Yamamoto J, Yamaguchi Y, Suzuki Y, Matsumoto M, Nakayama KI, Washburn MP, Saraf A, Florens L, Sato S, Tomomori-Sato C, Conaway RC, Conaway JW, Hatakeyama S. Nat Commun. 2020;11:1063. doi: 10.1038/s41467-020-14849-1.
McKinney MC, McLennan R, Giniunaite R, Baker RE, Maini PK, Othmer HG, Kulesa PM. Dev Biol. 2020.
Chen J, Yu Z, Unruh JR, Slaughter BD, Jaspersen SL. Bio-Protocol. 2020;10:e3524. doi: 3510.21769/BioProtoc.23524.
Hu CK, Wang W, Brind'Amour J, Singh PP, Reeves GA, Lorincz MC, Sánchez Alvarado A, Brunet A. Science. 2020;367:870-874.
Zou F, Tu R, Duan B, Yang Z, Ping Z, Song X, Chen S, Price A, Li H, Scott A, Perera A, Li S, Xie T. Proc Natl Acad Sci U S A. 2020;117:3603-3609.
Bravo Nunez MA, Sabbarini IM, Eickbush MT, Liang Y, Lange JJ, Kent AM, Zanders SE. PLOS Genet. 2019.
Krishnan J, Persons JL, Peuss R, Hassan H, Kenzior A, Xiong S, Olsen L, Maldonado E, Kowalko JE, Rohner N. [published ahead of print February 6 2020]. J Exp Zool B Mol Dev Evol. 2020.
Batugedara G, Lu XM, Saraf A, Sardiu ME, Cort A, Abel S, Prudhomme J, Washburn MP, Florens L, Bunnik EM, Le Roch KG. [published ahead of print February 6 2020]. Microb Genom. 2020.
Bonner AM, Hughes SE, Hawley RS. [published ahead of print January 30 2020]. Curr Biol. 2019.
Kim JW, Berrios C, Kim M, Schade AE, Adelmant G, Yeerna H, Damato E, Iniguez AB, Florens L, Washburn MP, Stegmaier K, Gray NS, Tamayo P, Gjoerup O, Marto JA, DeCaprio J, Hahn WC. eLife. 2020;9. doi: 10.7554/eLife.53003.
Herbert ZT, Thimmapuram J, Xie S, Kershner JP, Kolling FW, Ringelberg CS, LeClerc A, Alekseyev YO, Fan J, Podnar JW, Stevenson HS, Sommerville G, Gupta S, Berkeley M, Koeman J, Perera A, Scott AR, Grenier JK, Malik J, Ashton JM, Pivarski KL, Wang X, Kuffel G, Mesa TE, Smith AT, Shen J, Takata Y, Volkert TL, Love JA, Zhang Y, Wang J, Xuei X, Adams M, Levine SS. [published ahead of print January 23 2020]. J Biomol Tech. 2020.
Shefchek KA, Harris NL, Gargano M, Matentzoglu N, Unni D, Brush M, Keith D, Conlin T, Vasilevsky N, Zhang XA, Balhoff JP, Babb L, Bello SM, Blau H, Bradford Y, Carbon S, Carmody L, Chan LE, Cipriani V, Cuzick A, Rocca MD, Dunn N, Essaid S, Fey P, Grove C, Gourdine JP, Hamosh A, Harris M, Helbig I, Hoatlin M, Joachimiak M, Jupp S, Lett KB, Lewis SE, McNamara C, Pendlington ZM, Pilgrim C, Putman T, Ravanmehr V, Reese J, Riggs E, Robb S, Roncaglia P, Seager J, Segerdell E, Similuk M, Storm AL, Thaxon C, Thessen A, Jacobsen JOB, McMurry JA, Groza T, Kohler S, Smedley D, Robinson PN, Mungall CJ, Haendel MA, Munoz-Torres MC, Osumi-Sutherland D. Nucleic Acids Res. 2020;48:D704-D715.
Reviews, Commentaries, Chapters or Books
Ma R, Wu Y, Zhai Y, Hu B, Ma W, Yang W, Yu Q, Chen Z, Workman JL, Yu X, Li S. Nucleic Acids Res. 2019;47:11132-11150.
Miller DE, Cook KR, Hawley RS. PLoS Genet. 2019;15:e1008421. doi: 1008410.1001371/journal.pgen.1008421.
Bhattacharya S, Workman JL. [published ahead of print October 23 2019]. Biochemistry. 2019.
Bland K, Orr AA. Mo Med. 2019;116:457-460.
Giniunaite R, McLennan R, McKinney MC, Baker RE, Kulesa PM, Maini PK. [published ahead of print October 18 2019]. Dev Dyn. 2019.
Adams MK, Banks CAS, Miah S, Killer M, Washburn MP. Methods Enzymol. 2019;626:23-40.
Denans N, Baek S, Piotrowski T. Annu Rev Cell Dev Biol. 2019;35:568-589.
Popova VV, Workman JL. Nat Cell Biol. 2019;21:1177-1178.
Smoyer CJ, Jaspersen SL. Curr Genet. 2019;65:1099-1106.
Conaway RC, Conaway JW. Nat Struct Mol Biol. 2019;26:771-776.
Duncan EM, Sánchez Alvarado A. Annu Rev Genet. 2019;53:16.1–16.20.
He S, Grasis JA, Nicotra ML, Juliano CE, Schnitzler CE. EvoDevo. 2019;10:20. doi: 10.1186/s13227-13019-10134-13225.
Abmayr SM, Workman JL. Cell Res. 2019;29:694-695.
Daugherty MD, Zanders SE. v.Curr Opin Genet De 2019;58:49-54.
De Carvalho M, Zanders SE. eLife. 2019;8:e46454. doi: 46410.47554/eLife.46454.
Barajas-Azpeleta R, Si K. eLife. 2019;8:e48899. doi: 48810.47554/eLife.48899.
Li Z, He XC, Li L. Curr Opin Hematol. 2019;26:258-265.
Zanders SE, Unckless RL. Curr Biol. 2019;29:R512-R520.
Kline AD, Krantz ID, Bando M, Shirahige K, Chea S, Sakata T, Rao S, Dorsett D, Singh VP, Gerton JL, Horsfield JA, Calof AL, Katz O, Grados M, Raible S, Baranano K, Lyon G, Musio A, Carrico CS, Clemens DK, Caudill P, Massa V, McGill BE, Dommestrup A, O'Connor J, Haaland RE. Am J Med Genet A. 2019;179:1030-1090.
Nolte C, De Kumar B, Krumlauf R. Genesis. 2019:e23306. doi: 10.1002/dvg.23306.
Venkatraman A, Li L. Nat Cell Biol. 2019;21:540-541.
Munoz WA, Trainor PA. Methods Mol Biol: Meiosis. 2019;1976:107-119.
Xu, X., Li L, Zhang C, Meng L. J Assist Reprod Genet. 2019;36:601-602. Correction: J Assist Reprod Genet. 2019 Jul 31. pii: 10.1007/s10815-019-01539-1. doi: 10.1007/s10815-019-01539-1.
Krishnan J, Rohner N. J Diabetes. 2019;11:193-203.
Salim D, Gerton JL. Chromosome Res. 2019;27:73-87.
Potapova TA, Gerton JL. Chromosome Res. 2019;27:109-127.
Taneyhill LA, Moody SA, Cox T, Klein OD, Marcucio R, Schneider RA, Trainor PA. Am J Med Genet A. 2019;179:864-869.
Moustakas-Verho JE, McLennan R, Spengler J, Kulesa PM, Cebra-Thomas JA. Methods Mol Biol. 2019;1920:247-263. Author's Correction: Methods Mol Biol. 2019;1920:C1.
Diaz Jr. RE, Trainor PA. In: Ziermann, D Jr., and Diogo, eds. Heads, Jaws and Muscles Anatomical, Functional and Developmental Diversity in Chordate Evolution, Springer; 2019:207-227.
Porokhovnik L, Gerton JL. Chromosome Res. 2019;27:1-3.
Hu D, Yan H, He XC, Li L.  F1000Res. 2019;8:F1000 Faculty Rev-72. Published 2019 Jan 18. doi:10.12688/f1000research.16793.1