Raw files such as BAM files and count matrices outputted by the CellRanger pipeline have been deposited in the Gene Expression Omnibus database. Source code used to build our shiny applications are uploaded to the following GitHub repository. Supplementary scripts and wrapper functions used to process our Seurat and pseudotime objects are available in the following GitHub repositories. All the plots were generated by shinny app except (Figure1H and Data S1-page18). And, the list of genes that used in the plots is in the manuscript "Table S5".
Stowers Original Data Repository
Supporting the scientific spirit of transparency, the Stowers Institute for Medical Research makes the data underlying its scientific publications freely accessible to the scientific community. Access to original, unprocessed data allows other scientists to validate and extend findings made by Stowers researchers.