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Chromatin accessibility in the Drosophila embryo is determined by transcription factor pioneering and enhancer activation

Brennan KJ, Weilert M, Krueger S, Pampari A, Liu HY, Yang AWH, Morrison JA, Hughes TR, Rushlow CA, Kundaje A, Zeitlinger J. [published ahead of print August 8 2023]. Dev Cell 2023;58:1-19.

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Publication Notes

The Stowers Institute contributing authors have selected to present the raw data of this manuscript resulting from work performed at The Stowers Institute.   The raw and processed data for ChIP-nexus, ChIP-seq, ATAC-seq, MNase-seq, and protein binding microarray experiments have been deposited at GEO under series accession number GSE218852. Trained BPNet and ChromBPNet models are available at Zenodo ( All original code has been deposited at GitHub (

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