Publications
Publications
Supporting the scientific spirit of transparency, the Stowers Institute for Medical Research makes the data underlying its scientific publications freely accessible to the scientific community. Access to original, unprocessed data allows other scientists to validate and extend findings made by Stowers researchers.
Filters:
Display results from:
Cavefish mount a rapid and sustained regenerative response following skeletal muscle injury.
Olsen L, Hassan H, Xia F, Keaton S, Rohner N. Zool Res. 2023;44:776-778.
Selection-driven trait loss in independently evolved cavefish populations
Moran RL, Richards EJ, Ornelas-Garcia CP, Gross JB, Donny A, Wiese J, Keene AC, Kowalko JE, Rohner N, McGaugh SE. Nat Commun. 2023;14:2557 doi: 10.1038/s41467-023-37909-8.
Circadian rhythm disruption linked to skeletal muscle dysfunction in the Mexican Cavefish
Olsen L, Krishnan J, Banks C, Hassan H, Rohner N. Curr Biol. 2023;33:R255-R256.
Next generation plasmids for transgenesis in zebrafish and beyond
Kemmler CL, Moran HR, Murray BF, Scoresby A, Klem JR, Eckert RL, Lepovsky E, Bertho S, Nieuwenhuize S, Burger S, D'Agati G, Betz C, Puller AC, Felker A, Ditrychova K, Botschi S, Affolter M, Rohner N, Lovely CB, Kwan KM, Burger A, Mosimann C.[publihsed ahead of print March 29 2023]. Development. 2023.
Diet-induced loss of adipose hexokinase 2 correlates with hyperglycemia
Shimobashi M, Thomas A, Shetty S, Frei IC, Wolnerhanssen BK, Weissenberger D, Vandekeere A, Planque M, Dietz N, Ritz D, Meyer-Gerspach AC, Maier T, Hay N, Peterli R, Fendt SM, Rohner N, Hall MN. eLife. 2023;12:e85103. doi.org/85110.87554/eLife.85103.
Divergent evolutionary pathways for aggression and territoriality in Astyanax cavefish
Espinasa L, Collins E, Ornelas-Garcia CP, Retaux S, Rohner N, Rutkowski J. Subterranean Biol. 2022;43:169-183.
Liver-derived cell lines from cavefish Astyanax mexicanus as an in vitro model for studying metabolic adaptation
Krishnan J, Wang Y, Kenzior O, Hassan H, Olsen L, Tsuchiya D, Kenzior A, Peuss R, Xiong S, Wang Y, Zhao C, Rohner N. Sci Rep. 2022;12:10115. doi: 10110.11038/s41598-10022-14507-10110.
The metabolome of Mexican cavefish shows a convergent signature highlighting sugar, antioxidant, and Ageing-Related metabolites
Medley JK, Persons J, Biswas T, Olsen L, Peuss R, Krishnan J, Xiong S, Rohner N. eLife. 2022;11:e74539. doi: 74510.77554/eLife.74539.
Genome-wide analysis of cis-regulatory changes in the metabolic adaptation of cavefish
Krishnan J, Seidel CW, Zhang N, Singh NP, VanCampen J, Peuss R, Xiong S, Kenzior A, Li H, Conaway JW, Rohner N. Nat Genet. 2022;54:684-693.
Enhanced lipogenesis through Ppary helps cavefish adapt to food scarcity
Xiong S, Wang W, Kenzior A, Olsen L, Krishnan J, Persons J, Medley K, Peuss R, Wang Y, Chen S, Zhang N, Thomas N, Miles JM, Sánchez Alvarado A, Rohner N. [published ahead of print April 8 2022].Curr Biol. 2022.
Hybridization underlies localized trait evolution in cavefish
Moran RL, Jaggard JB, Roback EY, Kenzior A, Rohner N, Kowalko JE, Ornelas-Garcia CP, McGaugh SE, Keene AC. iScience. 2022;25:103778. doi: 103710.101016/j.isci.102022.103778.
Pleiotropic function of the oca2 gene underlies the evolution of sleep loss and albinism in cavefish
O'Gorman M, Thakur S, Imrie G, Moran RL, Choy S, Sifuentes-Romero I, Bilandzija H, Renner KJ, Duboue E, Rohner N, McGaugh SE, Keene AC, Kowalko JE. Curr Biol. 2021;31:3694-3701 e3694.
Image3C, a multimodal image-based and label independent integrative method for single-cell analysis
Accorsi A, Box AC, Peuss R, Wood C, Sanchez Alvarado A, Rohner N. eLife. 2021;10. doi: 10.7554/eLife.65372.
Repeated evolution of circadian clock dysregulation in cavefish populations
Mack KL, Jaggard JB, Persons JL, Roback EY, Passow CN, Stanhope BA, Ferrufino E, Tsuchiya D, Smith SE, Slaughter BD, Kowalko J, Rohner N, Keene AC, McGaugh SE. PLoS Genet. 2020;17:e1009642.
A chromosome-level genome of Astyanax mexicanus surface fish for comparing population-specific genetic differences contributing to trait evolution
Warren WC, Boggs TE, Borowsky R, Carlson BM, Ferrufino E, Gross JB, Hillier L, Hu Z, Keene AC, Kenzior A, Kowalko JE, Tomlinson C, Kremitzki M, Lemieux ME, Graves-Lindsay T, McGaugh SE, Miller JT, Mommersteeg MTM, Moran RL, Peuss R, Rice ES, Riddle MR, Sifuentes-Romero I, Stanhope BA, Tabin CJ, Thakur S, Yamamoto Y, Rohner N. Nat Commun. 2021;12:1447.
Comparative transcriptome analysis of wild and lab populations of Astyanax mexicanus uncovers differential effects of environment and morphotype on gene expression
Krishnan J, Persons JL, Peuss R, Hassan H, Kenzior A, Xiong S, Olsen L, Maldonado E, Kowalko JE, Rohner N. J Exp Zool B Mol Dev Evol. 2020;334:530-539.
Adaptation to low parasite abundance affects immune investment and immunopathological responses of cavefish
Peuß R, Box AC, Chen S, Wang Y, Tsuchiya D, Persons JL, Kenzior A, Maldonado E, Krishnan J, Scharsack JP, Slaughter BD, Rohner N. Nat Ecol Evol. 2020;4:1416-1430.
An Adult brain atlas reveals broad neuroanatomical changes in independently evolved populations of Mexican cavefish
Loomis C, Peuss R, Jaggard JB, Wang Y, McKinney S, Raftopoulos A, Raftopoulos S, Whu D, Green MR, McGaugh SE, Rohner NE, Keene AC, Duboue ER. Front Neuroanat. 2019;13:88. doi: 10.3389/fnana.2019.00088.
Stable transgenesis in Astyanax mexicanus using the Tol2 transposase system
Stahl BA, Peuss R, McDole B, Kenzior A, Jaggard JB, Gaudenz K, Krishnan J, McGaugh SE, Duboue ER, Keene AC, Rohner N. Dev Dyn. 2019;248:679-687.
Gamete collection and in vitro fertilization of Astyanax mexicanus
Peuss R, Zakibe Z, Krishnan J, Merryman MS, Baumann DP, Rohner N. J Vis Exp. 2019. doi: 10.3791/59334.
Previous
Page 1 of 2
The cavefish Astyanax mexicanus
Rohner N. Nat Methods. 2023;20:948-950.
Establishment, long-term maintenance, and Characterization of Primary Liver Cells from Astyanax mexicanus
Rajendran N, Deng F, Wang Y, Kenzior O, Krishnan J, Biswas T, Parmely T, Rohner N, Zhao C. Curr Protoc. 2023;3:e736.
Emerging Model Organisms
Wang W, Rohner N, Wang Y, eds. Neuromethods, Springer Protocols: Humana Press. 2023.
Multiplexed Quantitative Proteomics Analysis of Developing Human Brain Organoids
Florens L, Saraf A, Hao Y, Zhang Y, Wang Y, Parmely TJ, Zhao C, Washburn MP. In: W Wang, Y Wang, and N Rohner, eds. Emerging Model Organisms; 2023;194:325-355.
Generation of mini-brains from hiPSCs
Wang Y, Tsuchiya D, Zhao C. In: W Wang, Y Wang, and N Rohner, eds. Emerging model organism. New York, New York: Humana, New Yor, NY; 2023;194:291-306.
Off the deep end: What can deep learning do for the gene expression field?
Raicu AM, Fay JC, Rohner N, Zeitlinger J, Arnosti DN. J Biol Chem. 2023;299:102760.
Poor eyesight reveals a new vision gene
Biswas T, Krishnan J, Rohner N. eLife. 2022;11 doi: 10.7554/eLife.81520.
Lipid metabolism in adaptation to extreme nutritional challenges
Olsen L, Thum E, Rohner N. Dev Cell. 2021;56:1417-1429.
Introduction to the special issue - cavefish - adaptation to the dark
Kowalko JE, Franz-Odendaal TA, Rohner N. J Exp Zoo Pt B Mol Dev Evol. 2020;334:393-396.
Dark world rises: The emergence of cavefish as a model for the study of evolution, development, behavior, and disease.
McGaugh SE, Kowalko JE, Duboue E, Lewis P, Franz-Odendaal TA, Rohner N, Gross JB, Keene AC. J Exp Zool Pt B Mol Dev Evol. 2020;334:397-404.
In the Spotlight-Early Career Researcher
Rohner N. J Exp Zool Pt B Mol Dev Evol. 2020;334:387-388.
Sweet fish: Fish models for the study of hyperglycemia and diabetes
Krishnan J, Rohner N. J Diabetes. 2019;11:193-203.
Evolution: A Dark Past
Rohner N. Curr Biol.2018;28:R1190-R1192
‘Out of the Dark’ Cavefish are Entering Biomedical Research
Rohner N. Zebrafish, Medaka, and Other Small Fishes - New Model Animals in Biology, Medicine, and Beyond: Springer, Singapore; 2018:253-268.
Seeing a bright future for a blind fish
Gore AV, Rohner N, Retaux S, Jeffery WR. Dev Biol.2018;441:207-208.
Cavefish as an evolutionary mutant model system for human disease
Rohner N. Dev Biol. 2018;441:355-357.
Cavefish and the basis for eye loss
Krishnan J, Rohner N. Philos Trans R Soc Lond B Biol Sci.2017;372:20150487. doi: 20150410.20151098/rstb.20152015.20150487.
