Publications
Publications
Supporting the scientific spirit of transparency, the Stowers Institute for Medical Research makes the data underlying its scientific publications freely accessible to the scientific community. Access to original, unprocessed data allows other scientists to validate and extend findings made by Stowers researchers.
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Graded FGF activity patterns distinct cell types within the apical sensory organ of the sea anemone Nematostella vectensis
Sabin KZ, Chen S, Hill EM, Weaver KJ, Yonke J, Kirkman M, Redwine WB, Klompen AML, Zhao X, Guo F, McKinney MC, Dewey JL, Gibson MC. Dev Biol. 2024;510:50-65.
The variation and evolution of complete human centromeres
Logsdon GA, Rozanski AN, Ryabov F, Potapova T, Shepelev VA, Catacchio CR, Porubsky D, Mao Y, Yoo D, Rautiainen M, Koren S, Nurk S, Lucas JK, Hoekzema K, Munson KM, Gerton JL, Phillippy AM, Ventura M, Alexandrov IA, Eichler EE.[published ahead of print April 2024]. Nature. 2024.
A transcriptomics-based RNAi screen for regulators of meiosis and early stages of oocyte development in Drosophila melanogaster
Hughes SE, Price A, Briggs S, Staber C, James M, Anderson M, Hawley RS. G3 (Bethesda). 2024 doi: 10.1093/g3journal/jkae028.
Quantifying Cell Proliferation Through Immunofluorescence on Whole-Mount and Cryosectioned Regenerating Caudal Fins in African Killifish
Granillo AO, Schnittker RR, Wang W, Sanchez Alvarado A. Bio Protoc. 2023;13:e4908.
Sea lamprey enlightens the origin of the coupling of retinoic acid signaling to vertebrate hindbrain segmentation
Bedois AMH, Parker HJ, Price AJ, Morrison JA, Bronner ME, Krumlauf R. Nat Commun. 2024;15:1538 doi: 10.1038/s41467-024-45911-x.
Topological structures and syntenic conservation in sea anemone genomes
Zimmermann B, Montenegro JD, Robb SMC, Fropf WJ, Weilguny L, He S, Chen S, Lovegrove-Walsh J, Hill EM, Chen CY, Ragkousi K, Praher D, Fredman D, Schultz D, Moran Y, Simakov O, Genikhovich G, Gibson MC, Technau U. Nat Commun. 2023;14:8270.
3D spheroid culturing of Astyanax mexicanus liver-derived cell lines recapitulates distinct transcriptomic and metabolic states of in vivo tissue environment.
Biswas T, Rajendran N, Hassan H, Li H, Zhao C, Rohner N. [published ahead for print January 9 2024]. J Exp Zool B Mol Dev Evol. 2024.
Multiple reorganizations of the lateral elements of the synaptonemal complex facilitate homolog segregation in Bombyx mori oocytes
Xiang Y, Tsuchiya D, Yu Z, Zhao X, McKinney S, Unruh J, Slaughter B, Lake CM, Hawley RS. [published ahead of print January 5 2024. Curr Biol. 2024.
Microglial Rac1 is essential for experience-dependent brain plasticity and cognitive performance
Socodato R, Almeida TO, Portugal CC, Santos ECS, Tedim-Moreira J, Galvao-Ferreira J, Canedo T, Baptista FI, Magalhaes A, Ambrosio AF, Brakebusch C, Rubinstein B, Moreira IS, Summavielle T, Pinto IM, Relvas JB. Cell Rep. 2023;42:113447 doi: 10.1016/j.celrep.2023.113447.
Metabolic reprogramming underlies cavefish muscular endurance despite loss of muscle mass and contractility
Olsen L, Levy M, Medley JK, Hassan H, Miller B, Alexander R, Wilcock E, Yi K, Florens L, Weaver K, McKinney SA, Peuss R, Persons J, Kenzior A, Maldonado E, Delventhal K, Gluesenkamp A, Mager E, Coughlin D, Rohner N. Proc Natl Acad Sci U S A. 2023;120:e2204427120.
SYCP1 head-to-head assembly is required for chromosome synapsis in mouse meiosis
Billmyre KK, Kesler EA, Tsuchiya D, Corbin TJ, Weaver K, Moran A, Yu Z, Adams L, Delventhal K, Durnin M, Davies OR, Hawley RS. Sci Adv. 2023;9:eadi1562.
Phase plane dynamics of ERK phosphorylation
Shvartsman SY, McFann S, Wuhr M, Rubinstein BY. [published ahead of print September 11 2023]. J Biol Chem. 2023:105234.
Gap Junction-transported cAMP from the Niche Controls Stem Cell Progeny Differentiation
Tu R, Tang XA, Xu R, Ping Z, Yu Z, Xie T. [published ahead of print August 21 2023]. PNAS. 2023;120:e2304168120.
Nascent mitochondrial proteins initiate the localized condensation of cytosolic protein aggregates on the mitochondrial surface
Liu Q, Fong B, Yoo S, Unruh JR, Guo F, Yu Z, Chen J, Si K, Li R, Zhou C. Proc Natl Acad Sci U S A. 2023;120:e2300475120.
A Borrelia burgdorferi LptD homolog is required for flipping of surface lipoproteins through the spirochetal outer membrane
He H, Pramanik AS, Swanson SK, Johnson DK, Florens L, Zuckert WR. Mol Microbiol. 2023;119:752-767.
Myc promotes polyploidy in murine trophoblast cells and suppresses senescence
Singh VP, Hassan H, Deng F, Tsuchiya D, McKinney S, Ferro K, Gerton JL. Development; 2023;150:dev201581. doi: 201510.201242/dev.201581.
Shared retinoic acid responsive enhancers coordinately regulate nascent transcription ofHoxb coding and non-coding RNAs in the developing mouse neural tube
Afzal Z, Lange JJ, Nolte C, McKinney S, Wood C, Paulson A, De Kumar B, Unruh J, Slaughter BD, Krumlauf R. Development. 2023;150 doi: 10.1242/dev.201259.
Dynamic fibronectin assembly and remodeling by leader neural crest cells prevents jamming in collective cell migration.
Martinson WD, McLennan R, Teddy JM, McKinney MC, Davidson LA, Baker RE, Byrne HM, Kulesa PM, Maini PK. eLife. 2023;12 doi: 10.7554/eLife.83792.
Pluripotency retention and exogenous mRNA introduction in planarian stem cells in culture
Lei K, Zhang W, Chen J, McKinney SA, Ross EJ, Lee HC, Sánchez Alvarado A. iScience. 2023;26:106001.
An improved germline genome assembly for the sea lamprey Petromyzon marinus illuminates the evolution of germline-specific chromosomes.
Timoshevskaya N, Eskut KI, Timoshevskiy VA, Robb SMC, Holt C, Hess JE, Parker HJ, Baker CF, Miller AK, Saraceno C, Yandell M, Krumlauf R, Narum SR, Lampman RT, Gemmell NJ, Mountcastle J, Haase B, Balacco JR, Formenti G, Pelan S, Sims Y, Howe K, Fedrigo O, Jarvis ED, Smith JJ. Cell Rep. 2023;42:112263.
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A working model for the formation of Robertsonian chromosomes
Gerton JL. J Cell Sci. 2024;137:jcsw261912.
Pluripotency of a founding field: rebranding developmental biology
Rodgers CD, Memiya C, Arur S, Babonis L, Barres M, Bartlett M, Behringer RR, Benham-Pyle BW, Bergmann D, Blackman B, Brown CT, Browne B, Camacho J, Chabu CY, Chow I, Cleaver O, Cool J, Dennis MY, Dickenson AJ, Di Talia S, Frank M, Gillmor S, Haag ES, Hariharan IK, Harland R, Husbands A, Jerome-Majewska L, Koenig K, Labonne C, Layden MJ, Lowe C, Mani M, Martick M, McKown K, Moens C, Mosimann C, Onyenedum J, Reed R, Rivera A, rokhsar DS, Royer L, Rutaganiera F, Shahan R, Sinha N, Swalla BJ, Van Norman JM, Wagner DE, Wikramanayaka A, Zebell S, Brady SM. Development. 2024;151:dev202342 doi: 10.1242/dev.202342.
Stress-protecting harbors for hematopoietic stem cells
Yang Z, Dong R, Mao X, He XC, Li L. [published ahead of print November 24 2023]. Curr Opin Cell Biol. 2023;86:102284.
Epithelial to mesenchymal transition during mammalian neural crest cell delamination
Zhao R, Trainor PA. Semin Cell Dev Biol. 2023;138:54-67.
Chromosome-specific behaviors during early meiosis
Billmyre KK. Curr Top Dev Biol. 2023;151:127-154.
Casting CRISPR-Cas13d to fish for microprotein functions in animal development
Treichel AJ, Bazzini AA. iScience. 2022;25:105547 doi: 10.1016/j.isci.2022.105547.
Nucleolar Organizer Regions as transcription-based scaffolds of nucleolar structure and function
Cockrell AJ, Gerton JL. In: M Kloc, and JZ Kubiak, eds. Nuclear, Chromosomal, and Genomic Architecture in Biology and Medicine. Results and Problems in Cell Differentiation. 2022/11/09 ed; 2022;70:551-580.
Diversification and Functional Evolution of HOX Proteins
Singh NP, Krumlauf R. Front Cell Dev Biol. 2022;10:798812. doi: 798810.793389/fcell.792022.798812.
Manipulation of Gene Activity in the Regenerative Model Sea Anemone, Nematostella vectensis
Hill EM, Chen CY, Del Viso F, Ellington LR, He S, Karabulut A, Paulson A, Gibson MC. Methods Mol Biol. 2022;2450:437-465.
Cornelia de Lange syndrome and the Cohesin complex: Abstracts from the 9th Biennial Scientific and Educational Virtual Symposium 2020
Oliver C, Groves L, Hansen BD, Salehi M, Kheradmand S, Carrico CS, Caudill P, Mattingly M, Dorsett D, Chea S, Singh VP, Krantz ID, Huisman S, Deardorff MA, Kline AD. Abstracts from the 9th Biennial Scientific and Educational Virtual Symposium 2020. Am J Med Genet A. 2022;188A:1005-1014.
Standardized Statement for the Ethical Use of Human Cadaveric Tissues in Anatomy Research Papers: Recommendations from Anatomical Journal Editors-in-Chief
Iwanaga J, Singh V, Takeda S, Ogeng'o J, Kim HJ, Morys J, Ravi KS, Ribatti D, Trainor PA, Sanudo JR, Apaydin N, Sharma A, Smith HF, Walocha JA, Hegazy AMS, Duparc F, Paulsen F, Del Sol M, Adds P, Louryan S, Fazan VPS, Boddeti RK, Tubbs RS. Clin Anat. 2022;35:526-528.
The Diverse Manifestations of Regeneration and Why We Need to Study Them
Sasidharan V, Sánchez Alvarado A. Cold Spring Harb Perspect Biol. 2021:a040931. doi: 040910.041101/cshperspect.a040931.
Molecular Mechanisms and Evolutionary Consequences of Spore Killers in Ascomycetes
Zanders S, Johannesson H. Microbiol Mol Biol Rev. 2021;85:e0001621. doi: 0001610.0001128/MMBR.0000016-0001621.
Retinoic Acid signaling in vertebrate hindbrain segmentation:evolution and diversification
Bedois AMH, Parker HJ, Krumlauf R. Diversity. 2021;13:398.
Segmentation and patterning of the vertebrate hindbrain
Krumlauf R, Wilkinson DG. Development. 2021;148,dev186460. doi:10.1242/dev.186460.
Mechanics of a molecular mousetrap-- nucleation-limited innate immune signaling
Rodriguez Gama A, Miller T, Halfmann R. Biophys J. 2021;120:1150-1160..
Acknowledging the use of human cadaveric tissues in research papers: Recommendations from anatomical journal editors.
Iwanaga J, Singh V, Ohtsuka A, Hwang Y, Kim HJ, Morys J, Ravi KS, Ribatti D, Trainor PA, Sanudo JR, Apaydin N, Sengul G, Albertine KH, Walocha JA, Loukas M, Duparc F, Paulsen F, Del Sol M, Adds P, Hegazy A, Tubbs RS. Clin Anat. 2021;34:2-4.
Seven myths of how transcription factors read the cis-regulatory code
Zeitlinger J. Curr Opin Syst Biol. 2020;23:22-31.
Implications of the Orb2 Amyloid Structure in Huntington’s Disease
Hervas R, Murzin AG, Si K. Int J Mol Sci. 2020;21:E6910. doi: 6910.3390/ijms21186910.
A Hox gene regulatory network for hindbrain segmentation
Parker HJ, Krumlauf R. Curr Top Dev Biol. 2020;139:169-203.
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