Publications
Publications
Supporting the scientific spirit of transparency, the Stowers Institute for Medical Research makes the data underlying its scientific publications freely accessible to the scientific community. Access to original, unprocessed data allows other scientists to validate and extend findings made by Stowers researchers.
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Gene-environment interactions modulate the phenotypic severity in mouse models of congenital craniofacial syndromes
Fitriasari S, Fiorino R, Truong TH, McKinney MC, Dixon J, Dixon MJ, Trainor PA. J Clin Invest. 2025.
Identification of neural crest and melanoma cancer cell invasion and migration genes using high-throughput screening and deep attention networks
Kasemeier-Kulesa JC, Martina Perez S, Baker RE, Kulesa PM. [published ahead of print July 2025]. Dev Dyn. 2025.
Cave Adaptation Favors Aging Resilience in the Mexican Tetra
Cobham AE, Kenzior A, Morales-Sosa P, Javier JE, Swanson S, Wood C, Rohner N. NPJ Metab Health Dis. 2024;3:33.
A genetically tractable non-vertebrate system to study complete camera-type eye regeneration
Accorsi A, Pardo B, Ross E, Corbin TJ, McClain M, Weaver K, Delventhal K, Gattamraju A, Morrison JA, McKinney MC, McKinney SA, Sánchez Alvarado A. Nat Commun. 2025;16:6698 doi: 10.1038/s41467-025-61681-6.
From Development to Regeneration: Insights into Flight Muscle Adaptations from Bat Muscle Cell Lines
Camacho J, Zhao C, Deng F, Pena V, Morales-Sosa P, Bernal-Rivera A, Yang B, Huang S, Ghosh S, Katt M, Castellano L, Maddera C, Yu Z, Rohner N. Cells. 2025;14:1190 doi: 10.3390/cells14151190.
Multinucleated giant cells are hallmarks of ovarian aging with unique immune and degradation-associated molecular signatures
Converse A, Perry MJ, Dipali SS, Isola JVV, Kelly EB, Varberg JM, Zelinski MB, Stout MB, Pritchard MT, Duncan FE. PLoS Biol. 2025;23:e3003204.
Autonomous follicle quality control mechanisms: innate immune signaling capabilities of granulosa cells
Hashim PH, Perry MJ, Pritchard MT, Gerton JL, Duncan FE. Reproduction. 2025;169:e250042.
prdm1a drives a fate switch between hair cells of different mechanosensory organs
Sandler JE, Tsai YY, Chen S, Sabin L, Lush ME, Sur A, Ellis E, Tran NTT, Cook M, Scott AR, Kniss JS, Farrell JA, Piotrowski T. Nat Commun. 2025;16:7662 doi: 10.1038/s41467-025-62942-0.
Population genomics of premature termination codons in cavefish with substantial trait loss
Roback EY, Ferrufino E, Moran RL, Shennard D, Mulliniks C, Gallop J, Weagley J, Miller J, Fily Y, Ornelas-Garcia CP, Rohner N, Kowalko JE, McGaugh SE. Mol Biol Evol. 2025;42.
Genomic evolution of EGF-CFC genes in deuterostomes.
Shylo NA, Trainor PA. [published ahead of print June 2025]. Dev Dyn. 2025.
Leveraging chorionic villus biopsies for the derivation of patient-specific trophoblast stem cells
Varberg KM, Moreno-Irusta A, Novoa A, Musser B, Varberg JM, Goering JP, Saadi I, Iqbal K, Okae H, Arima T, Williams J, 3rd, Pisarska MD, Soares MJ. Commun Biol. 2025;8:964.
A repeatedly evolved mutation in Cryptochrome-1 of subterranean animals alters behavioral and molecular circadian rhythms
Swaminathan A, Kenzior A, Price A, Li H, McCoin C, Hintermann A, Weaver K, Morris N, Keene AC, Rohner N. iScience. 2025;28:112874.
Identification and characterization of short-chain dehydrogenase/reductase 3 (DHRS3) deficiency, a retinoic acid embryopathy of humans
Hashimoto As, Yu J, Williams C, Zueckert-Gaudenz K, Varshosaz P, Zhao R, Pilli N, Liu TY, Russell J, Tooze RS, Twigg SRF, Banka S, Sweeney EW, McGowan SJ, Knight SJL, Taylor JC, Froukh TJ, Palafoll MIV, Martinez-Gil N, Costa-Roger M, Villarreal-Molina MT, Hernandez EL, Jamra RA, Gattermann F, Koch-Hogrebe M, Wieczorek D, Trainor PA, Moise AR, Wilkie AOM, Kane MA. Genet Med Open. 2025;3:103427.
A tool to dissect heterotypic determinants of homotypic protein phase behavior
Kimbrough H, Jensen J, Weber C, Miller T, Maddera LE, Blanck JF, Babu VMP, Redwine WB, Halfmann R. Protein Sci. 2025;34:e70194.
Analysis of FAIMS for the study of affinity-purified protein complexes using the orbitrap ascend tribrid mass spectrometer
Goswami P, Cesare J, Rekowski MJ, Clark Z, Thornton J, Washburn MP. Mol Omics. 2025.
Chromatin remodeling protein BPTF mediates chromatin accessibility at gene promoters in planarian stem cells
Verma P, Allen JM, Sanchez Alvarado A, Duncan EM. BMC Genomics. 2025;26:232.
RAP proteins regulate apicoplast noncoding RNA processing in Plasmodium falciparum
Hollin T, Chahine Z, Abel S, Banks C, Pasaje CFA, Lenz T, Prudhomme J, Ybanez CM, Abbaszadeh AS, Niles JC, Florens L, Le Roch KG. Cell Rep. 2025;44:115928 doi: 10.1016/j.celrep.2025.115928.
Paired and solitary ionocytes in the zebrafish olfactory epithelium
Peloggia J, Cheung KY, Petkova MD, Schalek R, Boulanger-Weill J, Wu Y, Wang S, van Hateren NJ, Januszewski M, Jain V, Lichtman JW, Engert F, Piotrowski T, Whitfield TT, Jesuthasan S. Chem Senses. 2025.
An atypical basement membrane forms a midline barrier during left-right asymmetric gut development in the chicken embryo
Demler C, Lawlor JC, Yelin R, Llivichuzcha-Loja D, Shaulov L, Kim D, Stewart M, Lee FK, Shylo N, Trainor PA, Schultheiss TM, Kurpios NA. Elife. 2025;12.
Splicing Defects and Cell Death Cause SF3B2-Linked Craniofacial Microsomia.
Rao S, Watt KEN, Maili L, Lamb M, Farrow E, Hassan H, Weaver K, Miller B, Dash S, Cox LL, Gallacher L, Kant SG, Gibson M, Pastinen T, Li D, Bhoj EJK, Zhu H, Zhang J, Zhang YB, Tan TY, Trainor PA, Cox TC. J Dent Res. 2025:220345251325818.
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Zeitlinger J, Roy S, Ay F, Mathelier A, Medina-Rivera A, Mahony S, Sinha S, Ernst J. Bioinform Adv. 2025;5:vbaf106.
Embryology 2024: a summer like no other
Abshire KM, Dagher L, Espinoza F, Gupta A, Hammond JE, Lion AT, Merkuri F, Miao Y, Neiro J, Pahima M, Prabhakara C, Sonpho EK, Styfhals R, Trani Bustos M, Zimmer F. Development. 2025;152.
From conservation to adaptation: Understanding the Synaptonemal Complex's evolutionary dynamics.
Williams S, Hawley RS. Curr Opin Genet Dev. 2025;93:102349.
Signalling by co-operative higher-order assembly formation: linking evidence at molecular and cellular levels
Kobe B, Nanson JD, Hoad M, Blumenthal A, Gambin Y, Sierecki E, Stacey KJ, Ve T, Halfmann R. Biochem J. 2025;482:275-294.
The Society for Craniofacial Genetics and Developmental Biology 47th Annual Meeting
Trainor PA, Cox TC, Clouthier DE, Fantauzzo KA, Harris MP, Jeong J, Stottmann RW, Merrill AE. Am J Med Genet A. 2025:e64059.
NCR peptides in plant-bacterial symbiosis: applications and importance
Guerra-Garcia FJ, Sankari S. Trends Microbiol. 2025;33:147-150.
