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Supporting the scientific spirit of transparency, the Stowers Institute for Medical Research makes the data underlying its scientific publications freely accessible to the scientific community. Access to original, unprocessed data allows other scientists to validate and extend findings made by Stowers researchers.

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Multiple reorganizations of the lateral elements of the synaptonemal complex facilitate homolog segregation in Bombyx mori oocytes

Xiang Y, Tsuchiya D, Yu Z, Zhao X, McKinney S, Unruh J, Slaughter B, Lake CM, Hawley RS. Curr Biol. 2023.

Defining a core configuration for human centromeres during mitosis

Sen Gupta A, Seidel C, Tsuchiya D, McKinney S, Yu Z, Smith SE, Unruh JR, Gerton JL. Nat Commun. 2023;14:7947 doi: 10.1038/s41467-023-42980-2.

Microglial Rac1 is essential for experience-dependent brain plasticity and cognitive performance

Socodato R, Almeida TO, Portugal CC, Santos ECS, Tedim-Moreira J, Galvao-Ferreira J, Canedo T, Baptista FI, Magalhaes A, Ambrosio AF, Brakebusch C, Rubinstein B, Moreira IS, Summavielle T, Pinto IM, Relvas JB. Cell Rep. 2023;42:113447 doi: 10.1016/j.celrep.2023.113447.

Ac/Ds transposition for CRISPR/dCas9-SID4x epigenome modulation in zebrafish

Chong-Morrison V, Mayes S, Simoes FC, Senanayake U, Carroll DS, Riley PR, Wilson SW, Sauka-Spengler T. Biol Open. 2023;12.

Environmental and molecular regulation of asexual reproduction in the cnidarian Nematostella vectensis

Al-Shaer L, Leach W, Baban N, Yagodich M, Gibson MC, Layden MJ. R Soc Open Sci. 2023;10:230152.

Metabolic reprogramming underlies cavefish muscular endurance despite loss of muscle mass and contractility

Olsen L, Levy M, Medley JK, Hassan H, Miller B, Alexander R, Wilcock E, Yi K, Florens L, Weaver K, McKinney SA, Peuss R, Persons J, Kenzior A, Maldonado E, Delventhal K, Gluesenkamp A, Mager E, Coughlin D, Rohner N. Proc Natl Acad Sci U S A. 2023;120:e2204427120.

FGF2 antiproliferative effect in K-ras-driven tumor cells involves modulation of rRNA and nucleolus

de Luna Vitorino FN, Levy MJ, Mansano Wailemann RA, Lopes M, Silva ML, Sardiu ME, Garcia BA, Motta MCM, Oliveira CC, Armelin HA, Florens LA, Washburn MP, da Cunha JPC. [published ahead of print Novermber 3 2023]. J Cell Sci. 2023.

Reproductive seasonality of Astyanax mexicanus

Espinasa L, Rohner N, Retaux S.  Zool Res. 2023;44:698-700.

The multi-lineage transcription factor ISLI controls cardiomyocyte cell fate through interaction with NKX2.5

Maven BEJ, Gifford CA, Weilert M, Gonzalez-Teran B, Huttenhain R, Pelonero A, Ivey KN, Samse-Knapp K, Kwong W, Gordon D, McGregor M, Nishino T, Okorie E, Rossman S, Costa MW, Krogan NJ, Zeitlinger J, Srivastava D. Stem Cell Rep. [published ahead of print October 21 2023]. 2023.

Short tandem repeats bind transcription factorsto tune eukaryotic gene expression

Horton CA, Alexandari AM, Hayes MGB, Marklund E, Schaepe JM, Aditham AK, Shah N, Suzuki PH, Shrikumar A, Afek A, Greenleaf WJ, Gordan R, Zeitlinger J, Kundaje A, Fordyce PM.  Science. 2023;381:eadd1250.

Phylogeographic relationships and morphological evolution between cave and surface Astyanax mexicanus populations (De Filippi 1853) (Actinopterygii, Characidae)

Garduno-Sanchez M, Hernandez-Lozano J, Moran RL, Miranda-Gamboa R, Gross JB, Rohner N, Elliott WR, Miller J, Lozano-Vilano L, McGaugh SE, Ornelas-Garcia CP.  Mol Ecol. 2023;32:5626-5644.

The Swi-Snf chromatin remodeling complex mediates gene repression through metabolic control

Church MC, Price A, Li H, Workman JL. Nucleic Acids Res. 2023;51:10278-10291.

Pathologic polyglutamine aggregation begins with a self-poisoning polymer crystal

Kandola T, Venkatesan S, Zhang J, Lerbakken B, Schulze AV, Blanck JF, Wu J, Unruh J, Berry P, Lange JJ, Box A, Cook M, Sagui C, Halfmann R. eLife 2023;12:RP86939. doi: 10.7554/eLife.86939.

SYCP1 head-to-head assembly is required for chromosome synapsis in mouse meiosis

Billmyre KK, Kesler EA, Tsuchiya D, Corbin TJ, Weaver K, Moran A, Yu Z, Adams L, Delventhal K, Durnin M, Davies OR, Hawley RS. Sci Adv. 2023;9:eadi1562.

Lola-I is a promoter pioneer factor that establishes de novo Pol II pausing during development.

Ramalingam V, Yu X, Slaughter BD, Unruh JR, Brennan KJ, Onyshchenko A, Lange JJ, Natarajan M, Buck M, Zeitlinger J. Nat Commun. 2023;14:5862 doi: 10.1038/s41467-023-41408-1.

Phase plane dynamics of ERK phosphorylation

Shvartsman SY, McFann S, Wuhr M, Rubinstein BY. [published ahead of print September 11 2023]. J Biol Chem. 2023:105234.

rRNA transcription is integral to phase separation and maintenance of nucleolar structure

Dash S, Lamb MC, Lange JJ, McKinney MC, Tsuchiya D, Guo F, Zhao X, Corbin TJ, Kirkman M, Delventhal K, Moore EL, McKinney S, Shiang R, Trainor PA. PLoS Genet. 2023;19:e1010854.

Hypomyelination, hypodontia and craniofacial abnormalities in a Polr3b mouse model of leukodystrophy

Michell-Robinson MA, Watt KEN, Grouza V, Macintosh J, Pinard M, Tuznik M, Chen X, Darbelli L, Wu CL, Perrier S, Chitsaz D, Uccelli NA, Liu H, Cox TC, Muller CW, Kennedy TE, Coulombe B, Rudko DA, Trainor PA, Bernard G. [published ahead of print August 28 2023]. Brain. 2023:1-16.

Cell-type profiling of the sympathetic nervous system using spatial transcriptomics and spatial mapping of mRNA..

Kasemeier-Kulesa JC, Morrison JA, McKinney S, Li H, Gogol M, Hall K, Chen S, Wang Y, Perera A, McLennan R, Kulesa PM. Dev Dyn. 2023;252:1130-1142.

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Chromatin balances cell redox and energy homeostasis

Sugamuna T, Workman J. Epigenet Chromatin. 2023;16:46. https://doi.org/10.1186/s13072-13023-00520-13078.

A Generalist's Guide to Quantifying Swimming Behavior Within Traditional and Nontraditional Teleost Models

Olsen L, Alexander R, Krishnan J, Rohner N. In: W Wang, Y Wang, and N Rohner, eds. Emerging Model Organisms. New York, NY: Humana, New York, NY; 2023;194:263-272.

The SWI/SNF Complex in Neural Crest Cell Development and Disease

Fountain DM, Sauka-Spengler T.  Annu Rev Genomics Hum Genet. 2023;24:203-223.

Second Special Issue on Methods for Omics Research: Proteome Research and Beyond

Florens L, Dong MQ, LaBaer J. J Proteome Res. 2023;22:1381-1384.

Identification and Localization of Cell Types in the Mouse Olfactory Bulb Using Slide-SeqV2

Fang A, Petentler K, Price A, Malloy S, Maddera C, Russell J, Treese M, Li H, Wang Y, McKinney S, Perera A, Yu CR. Methods Mol Biol. 2023;2710:171-183. Published Erratum Methods Mol Biol. 2023;2710:C1. doi: 10.1007/978-1-0716-3425-7_17.

Serial block-face scanning electron microscopy of Schmidtea mediterranea.

McClain ML, Nowotarski SH. Methods Cell Biol. 2023;177:213-240.

The cavefish Astyanax mexicanus

Rohner N. Nat Methods. 2023;20:948-950.

(mis)‑Targeting of SWI/SNF complex(es) in cancer

Reddy D, Bhattacharya S, Workman JL. Cancer Metastasis Rev. 2023.

Emerging questions in transcriptional regulation : What are the sequence rules driving gene regulation?

Nora EP, Aerts S, Wittkopp PJ, Bussemaker HJ, Bulyk M, Sinha S, Zeitlinger J, Crocker J, Fuxman Bass JI. Cell Syst. 2023;14:247-251.

Establishment, long-term maintenance, and Characterization of Primary Liver Cells from Astyanax mexicanus

Rajendran N, Deng F, Wang Y, Kenzior O, Krishnan J, Biswas T, Parmely T, Rohner N, Zhao C. Curr Protoc. 2023;3:e736.

Personal autonomy and self-determination are crucial for professionalism in healthcare

Organ JM, Smith HF, Trainor PA, Allen K, Balta JY, Beresheim AC, Brewer-Deluce D, Brown KM, Burrows AM, Byers KT, Byram JN, Cale AS, Carroll MA, Champney T, Cornwall J, Dayal MR, DeLeon VB, Dunnwald M, Ferrigno C, Finn GM, Fox GM, Geller PL, Guttmann GD, Harper N, Harrell KM, Hartstone-Rose A, Hildebrandt S, Hortsch M, Jackson J, Johnson LE, Lohman Bonfiglio CM, McCumber TL, Menegaz RA, Mussell JC, O'Loughlin VD, Otobo TM, Oyedele O, Pascoe MA, Person D, Reidenberg JS, Robinson RE, Rogers KA, Ros MA, Ross CF, Sanders KA, Schmitt B, Schoenwolf GC, Smith TC, Smith TD, Sumner DR, Taylor AB, Taylor MJ, Teaford MF, Topp KS, Willmore KE, Wisco JJ, Yang J, Zumwalt AC.  Anat Sci Educ. 2023;16:571-573.

Translation and mRNA Stability Control

Wu Q, Bazzini AA. [published ahead of print April 1 2023].  Annu Rev Biochem 2023.

Epithelial to mesenchymal transition during mammalian neural crest cell delamination

Zhao R, Trainor PA. Semin Cell Dev Biol. 2023;138:54-67.

RNA Polymerases I and III in development and disease

Watt KE, Macintosh J, Bernard G, Trainor PA. Semin Cell Dev Biol. 2023;136:49-63.

Gene-environment interactions in the pathogenesis of common craniofacial anomalies

Fitriasari S, Trainor PA. Curr Top Dev Biol. 2023;152:139-168.

ISSCR Education Committee Syllabus and Learning Guide for Enhancing Stem Cell Literacy

Perlin JR, Anderson WJ, Bartfeld S, Couturier A, de Soysa Y, Hawley RS, Hu P, Loh YH, Mandal L, Master Z, Muotri AR, Piddini E, Polo JM, Mazzoni EO. Stem Cell Rep. 2023;18:417-419

Emerging Model Organisms

Wang W, Rohner N, Wang Y, eds. Neuromethods, Springer Protocols: Humana Press. 2023.

Multiplexed Quantitative Proteomics Analysis of Developing Human Brain Organoids

Florens L, Saraf A, Hao Y, Zhang Y, Wang Y, Parmely TJ, Zhao C, Washburn MP. In: W Wang, Y Wang, and N Rohner, eds. Emerging Model Organisms; 2023;194:325-355.

Generation of mini-brains from hiPSCs

Wang Y, Tsuchiya D, Zhao C. In: W Wang, Y Wang, and N Rohner, eds. Emerging model organism. New York, New York: Humana, New Yor, NY; 2023;194:291-306.
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