Publications
Publications
Supporting the scientific spirit of transparency, the Stowers Institute for Medical Research makes the data underlying its scientific publications freely accessible to the scientific community. Access to original, unprocessed data allows other scientists to validate and extend findings made by Stowers researchers.
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Establishing Primary and Stable Cell Lines from Frozen Wing Biopsies for Cellular, Physiological, and Genetic Studies in Bats
Deng F, Morales-Sosa P, Bernal-Rivera A, Wang Y, Tsuchiya D, Javier JE, Rohner N, Zhao C, Camacho J. Curr Protoc. 2024;4:e1123.
Sugar assimilation underlying dietary evolution of Neotropical bats
Camacho J, Bernal-Rivera A, Pena V, Morales-Sosa P, Robb SMC, Russell J, Yi K, Wang Y, Tsuchiya D, Murillo-Garcia OE, Rohner N. [published ahead of print August 28 2024]. Nat Ecol Evol. 2024.
Astyanax mexicanus surface and cavefish chromosome-scale assemblies for trait variation discovery
Warren WC, Rice ES, X M, Roback E, Keene A, Martin F, Ogeh D, Haggerty L, Carroll RA, McGaugh S, Rohner N. G3 (Bethesda). 2024:jka3103 doi: 10.1093/g3journal/jkae103.
Host evolution shapes cavefish gut microbiome
Riddle MR, Nguyen NK, Nave M, Peuss R, Maldonado E, Rohner N, Tabin CJ. Ecol Evol. 2024;14:e11192.
The prevalence of copy number increase at multiallelic copy number variants associated with cave colonization
Pokrovac I, Rohner N, Pezer Z. Mol Ecol. 2024;33:e17339.
Starvation resistant cavefish reveal conserved mechanisms of starvation-induced hepatic lipotoxicity
Pozo-Morales M, Cobham AE, Centola C, McKinney MC, Liu P, Perazzolo C, Lefort A, Libert F, Bai H, Rohner N, Singh SP. Life Sci Alliance 2024;7:e202302458 doi: 10.26508/lsa.202302458.
Compartmentalized ocular lymphatic system mediates eye-brain immunity
Yin X, Zhang S, Lee JH, Dong H, Mourgkos G, Terwilliger G, Kraus A, Geraldo LH, Poulet M, Fischer S, Zhou T, Mohammed FS, Zhou J, Wang Y, Malloy S, Rohner N, Sharma L, Salinas I, Eichmann A, Thomas JL, Saltzman WM, Huttner A, Zeiss C, Ring A, Iwasaki A, Song E. Nature. 2024.
3D spheroid culturing of Astyanax mexicanus liver-derived cell lines recapitulates distinct transcriptomic and metabolic states of in vivo tissue environment.
Biswas T, Rajendran N, Hassan H, Li H, Zhao C, Rohner N. [published ahead for print January 9 2024]. J Exp Zool B Mol Dev Evol. 2024;342:301-312.
Metabolic reprogramming underlies cavefish muscular endurance despite loss of muscle mass and contractility
Olsen L, Levy M, Medley JK, Hassan H, Miller B, Alexander R, Wilcock E, Yi K, Florens L, Weaver K, McKinney SA, Peuss R, Persons J, Kenzior A, Maldonado E, Delventhal K, Gluesenkamp A, Mager E, Coughlin D, Rohner N. Proc Natl Acad Sci U S A. 2023;120:e2204427120.
Reproductive seasonality of Astyanax mexicanus
Espinasa L, Rohner N, Retaux S. Zool Res. 2023;44:698-700.
Phylogeographic relationships and morphological evolution between cave and surface Astyanax mexicanus populations (De Filippi 1853) (Actinopterygii, Characidae)
Garduno-Sanchez M, Hernandez-Lozano J, Moran RL, Miranda-Gamboa R, Gross JB, Rohner N, Elliott WR, Miller J, Lozano-Vilano L, McGaugh SE, Ornelas-Garcia CP. Mol Ecol. 2023;32:5626-5644.
Cavefish mount a rapid and sustained regenerative response following skeletal muscle injury.
Olsen L, Hassan H, Xia F, Keaton S, Rohner N. Zool Res. 2023;44:776-778.
Selection-driven trait loss in independently evolved cavefish populations
Moran RL, Richards EJ, Ornelas-Garcia CP, Gross JB, Donny A, Wiese J, Keene AC, Kowalko JE, Rohner N, McGaugh SE. Nat Commun. 2023;14:2557 doi: 10.1038/s41467-023-37909-8.
Circadian rhythm disruption linked to skeletal muscle dysfunction in the Mexican Cavefish
Olsen L, Krishnan J, Banks C, Hassan H, Rohner N. Curr Biol. 2023;33:R255-R256.
Next generation plasmids for transgenesis in zebrafish and beyond
Kemmler CL, Moran HR, Murray BF, Scoresby A, Klem JR, Eckert RL, Lepovsky E, Bertho S, Nieuwenhuize S, Burger S, D'Agati G, Betz C, Puller AC, Felker A, Ditrychova K, Botschi S, Affolter M, Rohner N, Lovely CB, Kwan KM, Burger A, Mosimann C.[publihsed ahead of print March 29 2023]. Development. 2023.
Diet-induced loss of adipose hexokinase 2 correlates with hyperglycemia
Shimobashi M, Thomas A, Shetty S, Frei IC, Wolnerhanssen BK, Weissenberger D, Vandekeere A, Planque M, Dietz N, Ritz D, Meyer-Gerspach AC, Maier T, Hay N, Peterli R, Fendt SM, Rohner N, Hall MN. eLife. 2023;12:e85103. doi.org/85110.87554/eLife.85103.
Divergent evolutionary pathways for aggression and territoriality in Astyanax cavefish
Espinasa L, Collins E, Ornelas-Garcia CP, Retaux S, Rohner N, Rutkowski J. Subterranean Biol. 2022;43:169-183.
Liver-derived cell lines from cavefish Astyanax mexicanus as an in vitro model for studying metabolic adaptation
Krishnan J, Wang Y, Kenzior O, Hassan H, Olsen L, Tsuchiya D, Kenzior A, Peuss R, Xiong S, Wang Y, Zhao C, Rohner N. Sci Rep. 2022;12:10115. doi: 10110.11038/s41598-10022-14507-10110.
The metabolome of Mexican cavefish shows a convergent signature highlighting sugar, antioxidant, and Ageing-Related metabolites
Medley JK, Persons J, Biswas T, Olsen L, Peuss R, Krishnan J, Xiong S, Rohner N. eLife. 2022;11:e74539. doi: 74510.77554/eLife.74539.
Genome-wide analysis of cis-regulatory changes in the metabolic adaptation of cavefish
Krishnan J, Seidel CW, Zhang N, Singh NP, VanCampen J, Peuss R, Xiong S, Kenzior A, Li H, Conaway JW, Rohner N. Nat Genet. 2022;54:684-693.
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From Darkness to Discovery: Evolutionary, Adaptive and Translational Genetic Insights from Cavefish
Swaminathan A, Xia F, Rohner N. Trends Genet. 2024;40:24-38.
Unraveling Stress Resilience: Insights From Adaptations to Extreme Environments by Astyanax mexicanus Cavefish
Cobham AE, Rohner N. J Exp Zool B Mol Dev Evol. 2024.
A Generalist's Guide to Quantifying Swimming Behavior Within Traditional and Nontraditional Teleost Models
Olsen L, Alexander R, Krishnan J, Rohner N. In: W Wang, Y Wang, and N Rohner, eds. Emerging Model Organisms. New York, NY: Humana, New York, NY; 2023;194:263-272.
The cavefish Astyanax mexicanus
Rohner N. Nat Methods. 2023;20:948-950.
Establishment, long-term maintenance, and Characterization of Primary Liver Cells from Astyanax mexicanus
Rajendran N, Deng F, Wang Y, Kenzior O, Krishnan J, Biswas T, Parmely T, Rohner N, Zhao C. Curr Protoc. 2023;3:e736.
Emerging Model Organisms
Wang W, Rohner N, Wang Y, eds. Neuromethods, Springer Protocols: Humana Press. 2023.
Multiplexed Quantitative Proteomics Analysis of Developing Human Brain Organoids
Florens L, Saraf A, Hao Y, Zhang Y, Wang Y, Parmely TJ, Zhao C, Washburn MP. In: W Wang, Y Wang, and N Rohner, eds. Emerging Model Organisms; 2023;194:325-355.
Generation of mini-brains from hiPSCs
Wang Y, Tsuchiya D, Zhao C. In: W Wang, Y Wang, and N Rohner, eds. Emerging model organism. New York, New York: Humana, New Yor, NY; 2023;194:291-306.
Off the deep end: What can deep learning do for the gene expression field?
Raicu AM, Fay JC, Rohner N, Zeitlinger J, Arnosti DN. J Biol Chem. 2023;299:102760.
Poor eyesight reveals a new vision gene
Biswas T, Krishnan J, Rohner N. eLife. 2022;11 doi: 10.7554/eLife.81520.
Lipid metabolism in adaptation to extreme nutritional challenges
Olsen L, Thum E, Rohner N. Dev Cell. 2021;56:1417-1429.
Introduction to the special issue - cavefish - adaptation to the dark
Kowalko JE, Franz-Odendaal TA, Rohner N. J Exp Zoo Pt B Mol Dev Evol. 2020;334:393-396.
Dark world rises: The emergence of cavefish as a model for the study of evolution, development, behavior, and disease.
McGaugh SE, Kowalko JE, Duboue E, Lewis P, Franz-Odendaal TA, Rohner N, Gross JB, Keene AC. J Exp Zool Pt B Mol Dev Evol. 2020;334:397-404.
In the Spotlight-Early Career Researcher
Rohner N. J Exp Zool Pt B Mol Dev Evol. 2020;334:387-388.
Sweet fish: Fish models for the study of hyperglycemia and diabetes
Krishnan J, Rohner N. J Diabetes. 2019;11:193-203.
Evolution: A Dark Past
Rohner N. Curr Biol.2018;28:R1190-R1192
‘Out of the Dark’ Cavefish are Entering Biomedical Research
Rohner N. Zebrafish, Medaka, and Other Small Fishes - New Model Animals in Biology, Medicine, and Beyond: Springer, Singapore; 2018:253-268.
Seeing a bright future for a blind fish
Gore AV, Rohner N, Retaux S, Jeffery WR. Dev Biol.2018;441:207-208.
Cavefish as an evolutionary mutant model system for human disease
Rohner N. Dev Biol. 2018;441:355-357.
Cavefish and the basis for eye loss
Krishnan J, Rohner N. Philos Trans R Soc Lond B Biol Sci.2017;372:20150487. doi: 20150410.20151098/rstb.20152015.20150487.
