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Publications

Supporting the scientific spirit of transparency, the Stowers Institute for Medical Research makes the data underlying its scientific publications freely accessible to the scientific community. Access to original, unprocessed data allows other scientists to validate and extend findings made by Stowers researchers.

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prdm1a drives a fate switch between hair cells of different mechanosensory organs

Sandler JE, Tsai YY, Chen S, Sabin L, Lush ME, Sur A, Ellis E, Tran NTT, Cook M, Scott AR, Kniss JS, Farrell JA, Piotrowski T. Nat Commun. 2025;16:7662 doi: 10.1038/s41467-025-62942-0.

Paired and solitary ionocytes in the zebrafish olfactory epithelium

Peloggia J, Cheung KY, Petkova MD, Schalek R, Boulanger-Weill J, Wu Y, Wang S, van Hateren NJ, Januszewski M, Jain V, Lichtman JW, Engert F, Piotrowski T, Whitfield TT, Jesuthasan S. Chem Senses. 2025;50.

Stem and progenitor cell proliferation are independently regulated by cell type-specific cyclinD genes

Lush ME, Tsai YY, Chen S, Munch D, Peloggia J, Sandler JE, Piotrowski T. Nat Commun. 2025;16:5913 doi: 10.1038/s41467-025-60251-0.

Environmental and molecular control of tissue-specific ionocyte differentiation in zebrafish

Peloggia J, Lush ME, Tsai YY, Wood C, Piotrowski T. Development. 2024;151:dev202809 doi: 10.1242/dev.202809.

An anti-inflammatory activation sequence governs macrophage transcriptional dynamics during tissue injury in zebrafish

Denans N, Tran NTT, Swall ME, Diaz DC, Blanck J, Piotrowski T. Nat Commun. 2022;13:5356 doi: 10.1038/s41467-022-33015-3.

Single-cell transcriptome analysis reveals three sequential phases of gene expression during zebrafish sensory hair cell regeneration

Baek S, Tran NTT, Diaz DC, Tsai YY, Acedo JN, Lush ME, Piotrowski T. [published ahead of print 3-28-2022]. Dev Cell. 2022;57:1-21. doi: 10.1016/j.devcel.2022.1003.1001.

Tumor-initiating stem cell shapes its microenvironment into an immunosuppressive barrier and pro-tumorigenic niche

He X, Smith SE, Chen S, Li H, Wu D, Meneses-Giles PI, Wang Y, Hembree M, Yi K, Zhao X, Guo F, Unruh JR, Maddera LE, Yu Z, Scott A, Perera A, Wang Y, Zhao C, Bae K, Box A, Haug JS, Tao F, Hu D, Hansen DM, Qian P, Saha S, Dixon D, Anant S, Zhang D, Lin EH, Sun W, Wiedemann LM, Li L. Cell Rep. 2021;36:109674.doi: 10.1016/j.celrep.2021.109674.

Adaptive cell invasion maintains lateral line organ homeostasis in response to environmental changes.

Peloggia J, Munch D, Meneses-Giles P, Romero-Carvajal A, Lush ME, Lawson ND, McClain M, Pan YA, Piotrowski T. Dev Cell. 2021;56:1296-1312 e1297.

Evolutionary Origin and Nomenclature of Vertebrate Wnt11-Family Genes

Postlethwait JH, Navajas Acedo J, Piotrowski T. Zebrafish. 2019;16:469-476.

PCP and Wnt pathway components act in parallel during zebrafish mechanosensory hair cell orientation

Navajas Acedo J, Voas MG, Alexander R, Woolley T, Unruh JR, Li H, Moens C, Piotrowski T. Nat Commun. 2019;10:3993. doi: 3910.1038/s41467-41019-12005-y.

scRNA-Seq reveals distinct stem cell populations that drive hair cell regeneration after loss of Fgf and Notch signaling

Lush ME, Diaz DC, Koenecke N, Baek S, Boldt H, St Peter MK, Gaitan-Escudero T, Romero-Carvajal A, Busch-Nentwich EM, Perera AG, Hall KE, Peak A, Haug JS, Piotrowski T.  Elife. 2019;8:e44431. doi: 44410.47554/eLife.44431.

In toto imaging of the migrating Zebrafish lateral line primordium at single cell resolution

Nogare DD, Nikaido M, Somers K, Head J, Piotrowski T, Chitnis AB. In toto imaging of the migrating Zebrafish lateral line primordium at single cell resolution. Dev Biol. 2017;422:14-23.

Proliferation-independent regulation of organ size by Fgf/Notch signaling

Kozlovskaja-Gumbriene A, Yi R, Alexander R, Aman A, Jiskra R, Nagelberg D, Knaut H, McClain M, Piotrowski T. Proliferation-independent regulation of organ size by Fgf/Notch signaling. eLife.2017;6: e21049. doi: 21010.27554/eLife.21049.

Drosophila poised enhancers are generated during tissue patterning with the help of repression

Koenecke N, Johnston J, He Q, Meier S, Zeitlinger J. Genome Res. 2017;27:64-74.

Localized Gene Induction By Infrared-Mediated Heat Shock

Venero Galanternik M, Nikaido M, Yu Z, McKinney SA, Piotrowski T. Zebrafish.2016;13:537-540.

Glypican4 modulates lateral line collective cell migration non cell-autonomously

Venero Galanternik M, Lush ME, Piotrowski T. Dev Biol.2016;419:321-336.

Genome-wide identification of Drosophila dorso-ventral enhancers by differential histone acetylation analysis

Koenecke N, Johnston J, Gaertner B, Natarajan M, Zeitlinger J. Genome Biol. 2016;17:196.

Imaging collective cell migration and hair cell regeneration in the sensory lateral line

Venero Galanternik M, Navajas Acedo J, Romero-Carvajal A, Piotrowski T. Methods Cell Biol.2016;134:211-256.

Regeneration of Sensory Hair Cells Requires Localized Interactions between the Notch and Wnt Pathways.

Romero-Carvajal A, Navajas Acedo J, Jiang L, Kozlovskaja-Gumbriene A, Alexander R, Li H, Piotrowski T. Dev Cell. 2015;34:267-282.
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