Publications
Publications
Supporting the scientific spirit of transparency, the Stowers Institute for Medical Research makes the data underlying its scientific publications freely accessible to the scientific community. Access to original, unprocessed data allows other scientists to validate and extend findings made by Stowers researchers.
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Oogenesis involves a novel nuclear envelop remodeling mechanism in Schmidtea mediterranea
Guo L, Guo F, Zhang S, Zeng A, Yi K, McClain M, Kuhn CD, Parmely T, Sanchez Alvarado A. Dev Biol. 2025;520:13-20.
Heterologous reporter expression in the planarian Schmidtea mediterranea through somatic mRNA transfection
Hall RN, Weill U, Drees L, Leal-Ortiz S, Li H, Khariton M, Chai C, Xue Y, Rosental B, Quake SR, Sanchez Alvarado A, Melosh NA, Fire AZ, Rink JC, Wang B. Cell Rep Methods. 2022;2:100298 doi: 10.1016/j.crmeth.2022.100298.
Chromatin remodeller Chd7 is developmentally regulated in the neural crest by tissue-specific transcription factors
Williams RM, Taylor G, Ling ITC, Candido-Ferreira I, Fountain DM, Mayes S, Ates-Kalkan PS, Haug JO, Price AJ, McKinney SA, Bozhilovh YK, Tyser RCV, Srinivas S, Hughes JR, Sauka-Spengler T. PLoS Biol. 2024;22:e3002786.
A powerful and versatile new fixation protocol for immunostaining and in situ hybridization that preserves delicate tissues
Guerrero-Hernandez C, Doddihal V, Mann FG, Jr., Sánchez Alvarado A. BMC Biol. 2024;22:252.
Positional information modulates transient regeneration-activated cell states during vertebrate appendage regeneration
Ortega Granillo A, Zamora D, Schnittker RR, Scott AR, Spluga A, Russell J, Brewster CE, Ross EJ, Acheampong DA, Zhang N, Ferro K, Morrison JA, Rubinstein BY, Perera AG, Wang W, Sanchez Alvarado A. iScience. 2024;27:110737.
Identification of protein aggregates in the aging vertebrate brainwith prion-like and phase-separation properties
Harel I, Chen YR, Ziv I, Singh PP, Heinzer D, Navarro Negredo P, Goshtchevsky U, Wang W, Astre G, Moses E, McKay A, Machado BE, Hebestreit K, Yin S, Sánchez Alvarado A, Jarosz DF, Brunet A. Cell Rep. 2024:112787 doi: 10.1016/j.celrep.2023.112787.
A PAK family kinase and the Hippo/Yorkie pathway modulate WNT signaling to functionally integrate body axes during regeneration
Doddihal V, Mann FG, Jr., Ross EJ, McKinney MC, Guerrero-Hernandez C, Brewster CE, McKinney SA, Sanchez Alvarado A. Proc Natl Acad Sci U S A. 2024;121:e2321919121.
Quantifying Cell Proliferation Through Immunofluorescence on Whole-Mount and Cryosectioned Regenerating Caudal Fins in African Killifish
Granillo AO, Schnittker RR, Wang W, Sanchez Alvarado A. Bio Protoc. 2023;13:e4908.
Pluripotency retention and exogenous mRNA introduction in planarian stem cells in culture
Lei K, Zhang W, Chen J, McKinney SA, Ross EJ, Lee HC, Sánchez Alvarado A. iScience. 2023;26:106001.
Molecular characterization of a flatworm Girardia isolate from Guanajuato, Mexico
Duncan EM, Nowotarski SH, Guerrero-Hernandez C, Ross EJ, D'Orazio JA, Clubes de Ciencia Mexico Workshop for Developmental B. [published ahead of print June 17 2022]. Dev Biol 2022.
Island-specific evolution of a sex-primedautosome in a sexual planarian
Guo L, Bloom JS, Dols-Serrate D, Boocock J, Ben-David E, Schubert OT, Kozuma K, Ho K, Warda E, Chui C, Wei Y, Leighton D, Lemus Vergara T, Riutort M, Sánchez Alvarado A, Kruglyak L. [published ahead of print June 1 2022]. Nature. 2022;606:329-334.
Enhanced lipogenesis through Ppary helps cavefish adapt to food scarcity
Xiong S, Wang W, Kenzior A, Olsen L, Krishnan J, Persons J, Medley K, Peuss R, Wang Y, Chen S, Zhang N, Thomas N, Miles JM, Sánchez Alvarado A, Rohner N. [published ahead of print April 8 2022].Curr Biol. 2022.
Hox genes regulate asexual reproductive behavior and tissue segmentation in adult animals
Arnold CP, Lozano AM, Mann FG, Jr., Nowotarski SH, Haug JO, Lange JJ, Seidel CW, Sánchez Alvarado A. Nat Commun. 2021;12:6706. doi: 6710.1038/s41467-41021-26986-41462.
Planarian Ovary Dissection for Ultrastructural Analysis and Antibody Staining
Guo F, McClain M, Zhao X, Yi K, Parmely T, Unruh J, Slaughter B, Kruglyak L, Guo L, Sánchez Alvarado A. J Vis Exp. 2021:e62713. doi:62710.63791/62713.
Identification of rare, transient post-mitotic cell states that are induced by injury and required for whole-body regeneration in Schmidtea mediterranea
Benham-Pyle BW, Brewster CE, Kent AM, Mann FG, Jr., Chen S, Scott AR, Box AC, Sánchez Alvarado A. Nat Cell Biol. 2021;23:939-952.
Decellularization enables functional analysis of ECM remodeling in planarian regeneration
Sonpho E, Mann FG, Jr., Levy M, Ross EJ, Guerrero-Hernandez C, Florens L, Saraf A, Doddihal V, Ounjai P, Sánchez Alvarado A. Mol Cell Proteomics. 2021:100137. doi: 100110.101016/j.mcpro.102021.100137.
The Planarian Anatomy Ontology: A resource to connect data within and across experimental platforms
Nowotarski SH, Davies EL, Robb SMC, Ross EJ, Matentzoglu N, Doddihal V, Mir M, McClain M, Sánchez Alvarado A. Development. 2021;148:dev196097. doi: 196010.191242/dev.196097.
Image3C, a multimodal image-based and label independent integrative method for single-cell analysis
Accorsi A, Box AC, Peuss R, Wood C, Sanchez Alvarado A, Rohner N. eLife. 2021;10. doi: 10.7554/eLife.65372.
Canonical and early lineage-specific stem cell types identified in planarian SirNeoblasts
Niu K, Xu H, Xiong YZ, Zhao Y, Gao C, Seidel CW, Pan X, Ying Y, Lei K. Cell Regen. 2021;10:15.
Changes in regeneration-responsive enhancers shape regenerative capacities in vertebrates
Wang W, Hu CK, Zeng A, Alegre D, Hu D, Gotting K, Ortega Granillo A, Wang Y, Robb S, Schnittker R, Zhang S, Alegre D, Li H, Ross E, Zhang N, Brunet A, Sanchez Alvarado A. Science. 2020;369: eaaz3090. doi: 10.1126/science.aaz3090.
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The Stacking Cell Puzzle
Mir M, Nowotarski S. Patterns. 2024;5:101040.
Serial block-face scanning electron microscopy of Schmidtea mediterranea.
McClain ML, Nowotarski SH. Methods Cell Biol. 2023;177:213-240.
Developmental biology is poised to discover altogether new principles in biology in the 21st century
Sánchez Alvarado A. Dev Biol. 2022;488:47-53.
Schmidtea happens:Re-establishing the planarian as a model for studying the mechanisms of regeneration
Newmark PA, Sánchez Alvarado A. Curr Top Dev Biol. 2022;147:307-344.
The Diverse Manifestations of Regeneration and Why We Need to Study Them
Sasidharan V, Sánchez Alvarado A. Cold Spring Harb Perspect Biol. 2021:a040931. doi: 040910.041101/cshperspect.a040931.
Unceasingly searching for answers - an interview with Claudio Stern
Sánchez-Alvarado A. Int J Dev Biol. 2021;65:131-136.
Regulation of Genomic Output and (Pluri)potency in Regeneration
Duncan EM, Sánchez Alvarado A. Annu Rev Genet. 2019;53:16.1–16.20.
Planarians and the History of Animal Regeneration: Paradigm Shifts and Key Concepts in Biology
Elliott SA, Sánchez Alvarado A. Methods Mol Biol.2018;1774:207-239.
Planarian High Molecular Weight DNA Isolation by Spooling
Zhang S, Sánchez Alvarado A. Methods Mol Biol.2018;1774:277-284.
Whole-Mount BrdU Staining with Fluorescence In Situ Hybridization in Planarians
Cheng LC, Sánchez Alvarado A. Methods Mol Biol.2018;1774:423-434.
Systemic RNA Interference in Planarians by Feeding of dsRNA Containing Bacteria.
Adler CE, Sánchez Alvarado A. Methods Mol Biol.2018;1774:445-454.
Culturing planarians in the laboratory
Merryman MS, Sánchez Alvarado A, Jenkin JC. Methods Mol Biol: Meiosis.2018;1774:241-258.
To solve old problems, study new research organisms.
Sánchez Alvarado A. Dev Biol.2018;433:111-114.
Types or States? Cellular Dynamics and Regenerative Potential.
Adler CE, Sanchez Alvarado A. Trends Cell Biol. 2015:25:687-96
SmedGD 2.0: The Schmidtea mediterranea genome database.
Robb SM, Gotting K, Ross E, Sanchez Alvarado A. Genesis. 2015;53:535-546.
Unravelling a can of worms.
Sanchez Alvarado A. eLife. 2015;4 e07431. doi: 07410.07554/eLife.07431.
Rethinking Differentiation: Stem Cells, Regeneration, and Plasticity.
Sanchez Alvarado A, Yamanaka S. Cell. 2014;157:110-119.
Learning about loss.
Sanchez Alvarado A. eLife. 2013;2:e00533. doi: 10.7554/eLife.00533.
On the trail of a tropical disease.
Sanchez Alvarado A. eLife. 2013;2:e01115. doi: 10.7554/eLife.01115.
The history and enduring contributions of planarians to the study of animal regeneration.
Elliott SA, Sanchez Alvarado A. Wiley Interdiscip Rev Dev Biol. 2013;2:301-326.
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