Publications
Publications
Supporting the scientific spirit of transparency, the Stowers Institute for Medical Research makes the data underlying its scientific publications freely accessible to the scientific community. Access to original, unprocessed data allows other scientists to validate and extend findings made by Stowers researchers.
Filters:
Display results from:
Enhanced lipogenesis through Ppary helps cavefish adapt to food scarcity
Xiong S, Wang W, Kenzior A, Olsen L, Krishnan J, Persons J, Medley K, Peuss R, Wang Y, Chen S, Zhang N, Thomas N, Miles JM, Sánchez Alvarado A, Rohner N. [published ahead of print April 8 2022].Curr Biol. 2022.
Hybridization underlies localized trait evolution in cavefish
Moran RL, Jaggard JB, Roback EY, Kenzior A, Rohner N, Kowalko JE, Ornelas-Garcia CP, McGaugh SE, Keene AC. iScience. 2022;25:103778. doi: 103710.101016/j.isci.102022.103778.
Pleiotropic function of the oca2 gene underlies the evolution of sleep loss and albinism in cavefish
O'Gorman M, Thakur S, Imrie G, Moran RL, Choy S, Sifuentes-Romero I, Bilandzija H, Renner KJ, Duboue E, Rohner N, McGaugh SE, Keene AC, Kowalko JE. Curr Biol. 2021;31:3694-3701 e3694.
Image3C, a multimodal image-based and label independent integrative method for single-cell analysis
Accorsi A, Box AC, Peuss R, Wood C, Sanchez Alvarado A, Rohner N. eLife. 2021;10. doi: 10.7554/eLife.65372.
Repeated evolution of circadian clock dysregulation in cavefish populations
Mack KL, Jaggard JB, Persons JL, Roback EY, Passow CN, Stanhope BA, Ferrufino E, Tsuchiya D, Smith SE, Slaughter BD, Kowalko J, Rohner N, Keene AC, McGaugh SE. PLoS Genet. 2020;17:e1009642.
A chromosome-level genome of Astyanax mexicanus surface fish for comparing population-specific genetic differences contributing to trait evolution
Warren WC, Boggs TE, Borowsky R, Carlson BM, Ferrufino E, Gross JB, Hillier L, Hu Z, Keene AC, Kenzior A, Kowalko JE, Tomlinson C, Kremitzki M, Lemieux ME, Graves-Lindsay T, McGaugh SE, Miller JT, Mommersteeg MTM, Moran RL, Peuss R, Rice ES, Riddle MR, Sifuentes-Romero I, Stanhope BA, Tabin CJ, Thakur S, Yamamoto Y, Rohner N. Nat Commun. 2021;12:1447.
Comparative transcriptome analysis of wild and lab populations of Astyanax mexicanus uncovers differential effects of environment and morphotype on gene expression
Krishnan J, Persons JL, Peuss R, Hassan H, Kenzior A, Xiong S, Olsen L, Maldonado E, Kowalko JE, Rohner N. J Exp Zool B Mol Dev Evol. 2020;334:530-539.
Adaptation to low parasite abundance affects immune investment and immunopathological responses of cavefish
Peuß R, Box AC, Chen S, Wang Y, Tsuchiya D, Persons JL, Kenzior A, Maldonado E, Krishnan J, Scharsack JP, Slaughter BD, Rohner N. Nat Ecol Evol. 2020;4:1416-1430.
An Adult brain atlas reveals broad neuroanatomical changes in independently evolved populations of Mexican cavefish
Loomis C, Peuss R, Jaggard JB, Wang Y, McKinney S, Raftopoulos A, Raftopoulos S, Whu D, Green MR, McGaugh SE, Rohner NE, Keene AC, Duboue ER. Front Neuroanat. 2019;13:88. doi: 10.3389/fnana.2019.00088.
Stable transgenesis in Astyanax mexicanus using the Tol2 transposase system
Stahl BA, Peuss R, McDole B, Kenzior A, Jaggard JB, Gaudenz K, Krishnan J, McGaugh SE, Duboue ER, Keene AC, Rohner N. Dev Dyn. 2019;248:679-687.
Gamete collection and in vitro fertilization of Astyanax mexicanus
Peuss R, Zakibe Z, Krishnan J, Merryman MS, Baumann DP, Rohner N. J Vis Exp. 2019. doi: 10.3791/59334.
The role of gene flow in rapid and repeated evolution of cave related traits in Mexican tetra, Astyanax mexicanus
Herman A, Brandvain Y, Weagley J, Jeffery WR, Keene AC, Kono TJY, Bilandzija H, Borowsky R, Espinasa L, O'Quin K, Ornelas-Garcia CP, Yoshizawa M, Carlson B, Maldonado E, Gross JB, Cartwright RA, Rohner N, Warren WC, McGaugh SE. Mol Ecol. 2018;27:4397-4416.
Temperature preference of cave and surface populations of Astyanax mexicanus
Tabin JA, Aspiras A, Martineau B, Riddle M, Kowalko J, Borowsky R, Rohner N, Tabin CJ. Dev Biol. 2018;441:338-344.
Early adipogenesis contributes to excess fat accumulation in cave populations of Astyanax mexicanus
Xiong S, Krishnan J, Peuss R, Rohner N. Dev Biol. 2018;441:297-304.
Insulin resistance in cavefish as an adaptation to a nutrient-limited environment
Riddle MR, Aspiras AC, Gaudenz K, Peuss R, Sung JY, Martineau B, Peavey M, Box AC, Tabin JA, McGaugh S, Borowsky R, Tabin CJ, Rohner N. Nature.2018;555:647-651. Authors Correction: Nature. 2020 Nov 13. pii: 10.1038/s41586-020-2953-x. doi: 10.1038/s41586-020-2953-x.
CRISPR mutagenesis reveals the role of oca2 in melanin pigmentation in Astyanax mexicanus
Klaassen H, Wang Y, Adamski K, Rohner N, Kowalko JE. Dev Biol. 2018;441:313-318.
Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution.
Smith JJ, Kuraku S, Holt C, Sauka-Spengler T, Jiang N, Campbell MS, Yandell MD, Manousaki T, Meyer A, Bloom OE, Morgan JR, Buxbaum JD, Sachidanandam R, Sims C, Garruss AS, Cook M, Krumlauf R, Wiedemann LM, Sower SA, Decatur WA, Hall JA, Amemiya CT, Saha NR, Buckley KM, Rast JP, Das S, Hirano M, McCurley N, Guo P, Rohner N, Tabin CJ, Piccinelli P, Elgar G, Ruffier M, Aken BL, Searle SM, Muffato M, Pignatelli M, Herrero J, Jones M, Brown CT, Chung-Davidson YW, Nanlohy KG, Libants SV, Yeh CY, McCauley DW, Langeland JA, Pancer Z, Fritzsch B, de Jong PJ, Zhu B, Fulton LL, Theising B, Flicek P, Bronner ME, Warren WC, Clifton SW, Wilson RK, Li W. Nat Genet. 2013;45:415-421.
Next
Page 2 of 2
From Darkness to Discovery: Evolutionary, Adaptive and Translational Genetic Insights from Cavefish
Swaminathan A, Xia F, Rohner N. Trends Genet. 2024;40:24-38.
Unraveling Stress Resilience: Insights From Adaptations to Extreme Environments by Astyanax mexicanus Cavefish
Cobham AE, Rohner N. J Exp Zool B Mol Dev Evol. 2024.
A Generalist's Guide to Quantifying Swimming Behavior Within Traditional and Nontraditional Teleost Models
Olsen L, Alexander R, Krishnan J, Rohner N. In: W Wang, Y Wang, and N Rohner, eds. Emerging Model Organisms. New York, NY: Humana, New York, NY; 2023;194:263-272.
The cavefish Astyanax mexicanus
Rohner N. Nat Methods. 2023;20:948-950.
Establishment, long-term maintenance, and Characterization of Primary Liver Cells from Astyanax mexicanus
Rajendran N, Deng F, Wang Y, Kenzior O, Krishnan J, Biswas T, Parmely T, Rohner N, Zhao C. Curr Protoc. 2023;3:e736.
Emerging Model Organisms
Wang W, Rohner N, Wang Y, eds. Neuromethods, Springer Protocols: Humana Press. 2023.
Multiplexed Quantitative Proteomics Analysis of Developing Human Brain Organoids
Florens L, Saraf A, Hao Y, Zhang Y, Wang Y, Parmely TJ, Zhao C, Washburn MP. In: W Wang, Y Wang, and N Rohner, eds. Emerging Model Organisms; 2023;194:325-355.
Generation of mini-brains from hiPSCs
Wang Y, Tsuchiya D, Zhao C. In: W Wang, Y Wang, and N Rohner, eds. Emerging model organism. New York, New York: Humana, New Yor, NY; 2023;194:291-306.
Off the deep end: What can deep learning do for the gene expression field?
Raicu AM, Fay JC, Rohner N, Zeitlinger J, Arnosti DN. J Biol Chem. 2023;299:102760.
Poor eyesight reveals a new vision gene
Biswas T, Krishnan J, Rohner N. eLife. 2022;11 doi: 10.7554/eLife.81520.
Lipid metabolism in adaptation to extreme nutritional challenges
Olsen L, Thum E, Rohner N. Dev Cell. 2021;56:1417-1429.
Introduction to the special issue - cavefish - adaptation to the dark
Kowalko JE, Franz-Odendaal TA, Rohner N. J Exp Zoo Pt B Mol Dev Evol. 2020;334:393-396.
Dark world rises: The emergence of cavefish as a model for the study of evolution, development, behavior, and disease.
McGaugh SE, Kowalko JE, Duboue E, Lewis P, Franz-Odendaal TA, Rohner N, Gross JB, Keene AC. J Exp Zool Pt B Mol Dev Evol. 2020;334:397-404.
In the Spotlight-Early Career Researcher
Rohner N. J Exp Zool Pt B Mol Dev Evol. 2020;334:387-388.
Sweet fish: Fish models for the study of hyperglycemia and diabetes
Krishnan J, Rohner N. J Diabetes. 2019;11:193-203.
Evolution: A Dark Past
Rohner N. Curr Biol.2018;28:R1190-R1192
‘Out of the Dark’ Cavefish are Entering Biomedical Research
Rohner N. Zebrafish, Medaka, and Other Small Fishes - New Model Animals in Biology, Medicine, and Beyond: Springer, Singapore; 2018:253-268.
Seeing a bright future for a blind fish
Gore AV, Rohner N, Retaux S, Jeffery WR. Dev Biol.2018;441:207-208.
Cavefish as an evolutionary mutant model system for human disease
Rohner N. Dev Biol. 2018;441:355-357.
Cavefish and the basis for eye loss
Krishnan J, Rohner N. Philos Trans R Soc Lond B Biol Sci.2017;372:20150487. doi: 20150410.20151098/rstb.20152015.20150487.